MmuINT0003814 @ mm10
Intron Retention
Gene
ENSMUSG00000033624 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:MGI Symbol;Acc:MGI:2442188]
Coordinates
chr8:111114742-111115241:+
Coord C1 exon
chr8:111114742-111114863
Coord A exon
chr8:111114864-111115123
Coord C2 exon
chr8:111115124-111115241
Length
260 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCACAAACTGTCCATTGTAGTGG
3' ss Score
4.16
Exon sequences
Seq C1 exon
GTGTTCAGATTTATGACCGGACAAGTGTTCTTCACGTACTGATCAAAAAAGGTCAAGTTACTGGTGTGGAGACAGACAAAGGACAGATCGAATGCCAGTATTTTGTCAACTGTGCCGGGCAG
Seq A exon
GTAGGTTGGTAACTGGGTCTATGACTTAATTTAAATCTGCACTTTTTACTGTAGAGATACAAGGTTATCATTTTACTGAGATACTATACTGCTTATTTGGAGTGGGTAATCCAGAGCTATGTTCTAAACACAAACCTAGTCCTCAGATATGAGCAGCTAACAGTAGACTCCCACACTGGGTGAAGTAGTGTACTGTCTTAGTCAGAAGGCTACTGACTGTGTTTCTGTTCCTCTTCTCACCCACAAACTGTCCATTGTAG
Seq C2 exon
TGGGCATATGAGCTGGGTCTGTCCAACGAGGAGCCGCTTAGTATCCCGCTACACGCCTGTGAACACTTCTACCTTCTGACTCGTCCCTGGGACACCCCTCTGCAGAGCAACACACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033624:ENSMUST00000039333:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(11.1=100)
A:
NA
C2:
PF0126619=DAO=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATTTATGACCGGACAAGTGT
R:
TTGGTGTGTTGCTCTGCAGAG
Band lengths:
236-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types