HsaINT0123932 @ hg19
Intron Retention
Gene
ENSG00000102221 | PHF16
Description
PHD finger protein 16 [Source:HGNC Symbol;Acc:22982]
Coordinates
chrX:46893023-46898467:+
Coord C1 exon
chrX:46893023-46893190
Coord A exon
chrX:46893191-46898350
Coord C2 exon
chrX:46898351-46898467
Length
5160 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TGGTGGTATTTTATTTGTAGGTC
3' ss Score
7.47
Exon sequences
Seq C1 exon
GCCTGCTATGGCATCCTCAAGGTCCCAGAAGGCAGCTGGCTGTGTCGCTCCTGTGTCCTGGGCATTTATCCGCAATGTGTGTTATGTCCAAAGAAAGGTGGAGCCCTGAAGACCACCAAGACAGGGACTAAATGGGCTCATGTCAGCTGTGCCCTGTGGATCCCAGAG
Seq A exon
GTAAGAATTCATCCAGGCCCGTGAGACCATTTGCTCCAGGGTGTCCCTGTTCCCCACAGCATTCAGACTGACTCAGGCTCAGTATGGAAATGCTTCATGCTTGCCCATGTTTCTGAAGTAATAGTACTTCCACTTGAGCTACCTCAGATCCTTATTGGATGCACACTTGCATGTAAGCCCATGGTGATTAATATATAGGTGGTATTCCCAGTGGTATTTGGGATAATACCCGAATATATACACGATATTTGGGATAATACCCAAATATATACATGATATTTGGGTATATCATGTATAAATTGATAAATTTGTATGAGAGGAGAGACACAAAAGACCAGGGTGTGAGCAGCAGAATTTTTTAAGGTAAAACTTATATTTAGATGCCAAATTTTAAGTGTAGAGTTTTGTGATATTTTACACGTTTGTATCTGTAACCACAACTCAGACCAAGACATGAAATACCCTAAAAATAGACATAAAGCACCCCAGAAAGATCCTCTATACCCACTTTCCAGTCTCTATCCCCCAAGAATAACCACCATTTTTGTCTTGATCATGATAGATTAATTTTATCTGGTTTTAAACTTCATACAGTATGTATTTTTTTCGGTCTGGCTAACACTCCATGTTGTGGTGTATATCAATAGTTTATTCCTTTCTATTGCTAATATTCCATTGTATGGATATACTCTGATTTATTCATTTTCCTTTGATGGGCATTTGGGTTGTTTACAGGTTTAGGCTATTACAAATAAAGTGAGCAGTAACTCTTTGTCTACTGTGATGATGCCCTTTACTTTTTTATTTTTATTTATTTTATTTTATTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCTATCTCGGCTCACTGCAAACTTCACCTCTCAGGTTCACGCCATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCGCCACCATGCCTGGCTAATTTTTTTTTTTTTTTTTTGGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGCATGGTCTCGATCTCCTGACCTCACGTGATCCACCTGTCTAGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCGATGCCCTTTACTTTTTGAAGCTCTTTTTAGGGCTTACACTCAACACCTGCCAAAGACCTTCTTTACTCAAAATTCAATTTTTTATCATTATCTAGCCTGGTCCTTCAGTTGCTGGTATTTCCTGAGTGGCTACATGTACACTAACTTAATTAAAATGGGGCTTGAAGACATTTCTTCTTATGGCTGCCTTTTTTTTTCTTTAGCTGTGTGGATATCCCACTCATGCCCTCTCTCCCCAGCCACTATCCAAACCAGCAAATTTGTTAGGCAGTTTAACTGCATGACAAGAGAGACTGCAGAATCTAGTTAATGGGGAGCTGACATTATATCAGTAACTCATTCTCCTTTAAGATTTTCTTGTTTTTAATCTTGTTAATATTGGTTCCAGGGGAGTTATTGTCTAATAAAGAAGCTCAGAGTTACACTAAAAGTCCCATATATATACTTTTGTATTCCTATGGCTATAGACATCAGTATTTTAAAAAAATATTTGAATAGTAGTTTCTTTTTCTCACTAAGAACATCTAGACATAAAATAAACTCAGGTTTCTGGCTTGAGAATGACTGTTTTCCAACAGCAAATCCCTCAGCTAATAGAGTAGGCTCTCTCAGCTTATAAAAGTCCAGAACATGACTCAGGAAGAGCTCTTTAAAAACAAAATAGACTTTCTCAGTTATTGACATTCTCTTATGATTTCTAGTTCTTGGTTTCCAGTGCCTTCTGGACTACTCAAGATCTGTTAGTTTCCTGATGTGGGCAGAACCAGTACTAGTTTGGCATCCTTATTTGACAGTTCTTCACCTTTTAAAGCTGTATCTCTCTTAGAAACTCATGTATATATTTGGCGGGGTGGGGGGAATGAAAATACTTTTTACCAGCAGTTGCTTGACCCCTTATTTTCACATGGAAAAGAATATTTCCATCTTTTTAAAAAACATCCCTTTCTGCTGGGTGTGGTGACTCACGCCTATAATCCCAGCACTTTGGGAGGTCGAGGCAGGCAGATCACTTGAGTCCAGGAGTTTGAGACCAGCCTGGGCAACATGGCAAAACCCCATCTCTACTACAAATACAAAAAATTAGCCAGGTGTGGTGGTGCATGCCTGTAGTCCCAGATATTCAGGGGGCTGAGGCGGCAGGATCACTTGAGCCTGGGAGGTCGAGGCTGCAGTGAGCCCTGATCCTGCCACTGCACTCTAGCCTGGGTGACAGAGTGAGACCCTGATTCAAAAAGGAAAACAGAAAAAGCATCCCTTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGGTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGTGAAAATTTTCTCCCATTTTGTAGGTTGCCTGTTCACTCATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACGATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAAGTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCTTGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTAGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACGAGTTGGTGGGTGCAGCGCACCAGCATGGCACATGTATACATCTGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAAAAAAAAAAAGGAAAAAAAAAAAGCATCCCTTTCTTTTCAGCACTCTCCCAAAGACTTAATTTCACTTTGAAGCTACTTTGGCTGAGGGAGTAGGGTAAGCTCATGATAGTTATGTGGTTTTAAAGACTTTTGTTTTAAAATGTCATCCTCCTCCTTTCTACTTACATTCTGCAGTCTCTTCATTACACGGATGTGCTGTTTTTCAACAATATCATGGTTCCTTTGTAAATCAAATGGAAAGACTTGTCACTCCCTCTGTTTTTTATCCTTAGTTGATTAAATGAAACAACAAGGCATGTAGCACCATCTCTTAACATAATAGATACTCGATTTAGTTACTTTCAGTAGCTTTCTTTGGTTCCTAAGTAAAAGTGTCCATTACGGTAACCTTGGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGTACTTTGGGAGGCCAAGGCAGGAGGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTGAGGTAACATAGCAAGACCTGGTCTCTACAAAAAAAATAATAATAATTTTTAATTTTGTGGGTACATATTAGGTGTATATATTTACGGGATGCATGAGATTTTGATACAGGCATGTAATGCCTAATAATGACATCATGAAACATGGGGTATTCATCCCCTTCAAGCATTTATCCTTTTTGTGTTACAAACAATCCAGTTATGTTCTTGTAGTTATTTTTATATGTACAGTTAAGTTATTTTGACTATAGTCACCCTGTTGTGCCATCAAATAGTAGGTCTTATTCATTCTTTCTGACTATCCTTTTTGTACCCATTAATTATCGTCACCCTCCTCCTGCCCTGTTCCCCCCACTACCCTTCCCACCCTCTGGTAACCATCCTCCTACAGTCTATCTCCTTGAGTTCAGTTGTTTTTATTTTTAGATCCCACAAATAAATGAGAACATGCAATGTGTGTCTTTCTGTGCCTGGCTTATTTCACTTGACGTAATGACCTCCAGTTCTGTCCACGTTGTTGGAAATGACAGGATTTCGTTCTTTTATATGGTTGAATAGTACTCCATTGTATATATGTACCACATTTTCTTTATCCATTCGTCTGTTGATGGACACTTAGCTTATTTCCAAATCTTGACTATCGTGAACATTGCTGCAAAAAATATGGGAGTGCAGATACCTCTTTGATATACCGTTTTCCTTTCTTTTGGGTATATACCCAACAGTGGGATTGCTGGATAATATGGTAGCTCTATTTTTTGTGTTTTTTTTAGAATCCTCCAAACTATTCTCCATAGTGGTTGTACTAATTTACATTCCCACCAACAGTGTATAAACATTTCCTTTTCTCCACAGTGTTTGAGGGTTCCCTTTTCTCCACTCCTCACCAGCATTTGTTATTGCCTGTCATTTAGATAAAAGCCAAAAATATTTTTTTTTAATTAGCCAGGTGTGGTAGAGGCTGTGGTGGGAGGATCACTTGAACCCAGCAGTTCAAGGCTGTAGTAAGCCATGATTGCACCACTGAACTCTAGCCTGAGTGACAGAGGGAGACCTTGTCTCTAAAAAAAAAAAAAAAAAAGAAGAAAGAAAGAAAGAAAAGTAAAAGGTAATCATGCCTAGTCTATACTCCTGCTCTCTCATCCCATATGTGAATTATTTACATTACTGGAAATGAGTGAAGGACTGAGCAGTGGAAATAAGTTTTGTTTATTCTTGATTCCATATTAACCTTAAGAGATGTGACTTACCTCATTGTTTTGATGTTCTTAGCTTTATGTAACATCGTTTATGGTTTGTGAAAGGTACTTCTGGGATGCCTTGGTACTTCTGCCTTATGGTGGTATTTTATTTGTAG
Seq C2 exon
GTCAGCATTGCTTGTCCTGAGAGGATGGAACCGATCACGAAGATCTCCCACATCCCACCCAGTCGGTGGGCCTTAGTCTGCAACTTGTGCAAGTTGAAGACGGGGGCTTGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102221-PHF16:NM_001077445:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(20.7=21.4),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=FE(33.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)