MmuINT0118737 @ mm10
Intron Retention
Gene
ENSMUSG00000037315 | Jade3
Description
jade family PHD finger 3 [Source:MGI Symbol;Acc:MGI:2148019]
Coordinates
chrX:20499426-20502512:+
Coord C1 exon
chrX:20499426-20499593
Coord A exon
chrX:20499594-20502395
Coord C2 exon
chrX:20502396-20502512
Length
2802 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TGATGATGTTTTATTTGTAGGTC
3' ss Score
8.89
Exon sequences
Seq C1 exon
GCTTGCTATGGCATTCTCAAGATTCCAGAAGGTAGTTGGCTGTGCCGCTCCTGTGTCCTGGGCATTTATCCACAGTGTGTTTTATGTCCTAAGAAAGGTGGAGCCATGAAGACCACCAGAACAGGGACTAAATGGGCTCATGTCAGCTGTGCCCTGTGGATTCCAGAA
Seq A exon
GTAAGTAACCATCCAAATCTGGGCCAATTTCCTCCAGGGTACCTTCCTTCCTATGATGTTTAGACAGACTCAGACTGATCATGGAAATGCTTTCTGCTCAACTGTATTTCTGAGATTTCTGTGCTACCTCCAGTCTTCTTGTATACAACTGTGCCTGTTAGCCCAGATTTCTGTATTTGTGAGTGATATTTTCAGTAGTATTTGATAAATTTGTATGAGAGAAGAGACATAAAAGTCCAGGGTGTGGGGCTAGAGGTAGCTTAGCTATTAGGAGCTCTTACAAAAGATCCAAGTTTAGCTTCCTGCATGTCAAGCAGCTCATAGATAACTACCTGTAACTCTGCCTCCCAGGAAATTGATGGCCTCTGACCTCCAGAGGCACCCATACACACACATGCACATACTCACACACACATATATGTATAATTTTAAAATAAATATTTAAAAAATATTTAAAATAAACTACTTTTTAAAAGAAAAAGATAAGCAAAAGAGGAAAAAAACATTTTTAAAAGTAAAGCTTAACTTAAAATACCTGTAGCCACAAATCAAAATAAGACATGAAATACCACAGAAATATATAAATAGCATCCTGGAAAGGTCCCTAGTTCCTGAAAGTAAACCATTTTAATTTCTATCACTATGGATAAATTTTGTCTGTTTTTACGCTTCATATTTTTAGAGTAAGTATTCTTTGTTGCCTGGCTAGAACTCCATGTTGTAGTATGTATCAGTAGTTCATTAATTTACATTGCTTAGTTATTCATAATTATATGGATATTCTATTTATTTATTCTGCTTTGGATCTCTTATTCTAGGCTGTTACAAGTAAAGTAAACAATCACTCTTGCCCACTGTGGTAGTTTTCCTCTATTTTTTTTTAAAGACAAGGTTTCCCTCTTTTACTGACTAGCTGCCCTAGAACTCACAAAAATCCACCTGCCTCTGCCTCCCAAATTCTGGTATTAAGGACTACCACACCTAGCTAGTTGTTCTTTACTTAAAAAGCTCTTTTGAGTGCTTAAACTCAACACTTACCTAAGGCCTTTATTCAAAATTTATTCTTTATTATAAACCTATCCTTTAATTGTAGATATTTCCTGAATGGCTATTGTTCATTAACTTAATTAAACATGGCTTCTAAACTGAGCATGGTAGGACATTCCTCTAATCCCTATAATTGGAAGGCTGAGGCAGGAGGACTGAGATCTGGAAGCCATCTTGGAGATGTGTAGTAAGCTCAAAGACAGCCTGCATATCTAGACTCAGTAAACAAACAAAAACCAGTAGTTTGGGGTAGGGTATAGTAAGTGGTAGAGTATTGGCCTATTATGAACAAGGCATCTCTCCACTATCAAAAAACTACAATTAAAAAAGGTTGAAACCAGGCTTGGTATTGTATGCCTGTAATCCTTCATCCTTGGATGAAAAAGCAGGATAATCAAAAGCTAAAACCAGCCTTGCTACATAGCAACCTCGAGGCTAGCTTAAGTCATAGTGGGACCATGTCTCAAACAGACAAAAATCAGGGAACATAGCTGAGACATTATTTGCTTAGCATGTGCAAAGCCTAGGCTTGATCCCAACTACCACATACATAAAAATAAAATCACCTATAATCTCGGCACTCAGAAGGCTAGACTAAGAAAATCATGAGTTAAGGGCCACCCTGGGCTACATAGACCCTATCTCAAAAATAAATAAAACAAAAATAACTTTTAAAAAAACGTTAATTAACGTTCTCTTAGGGCTTCTCAATTCTTGATTTTCAGTACATTTTAGATTATTAAAGATCTCTCCTGATCTGGACAGAACTTGTAGTAGATGGATCATCCTTCTTTGATAGTTACTGCTTTTTGAAACCTGTTTATTTCTGGTATTGGAGAGATTGTCTAGGGGTTAAGAGCACTGGCTACTCTTTCAAAAGACCTAGCTTCCGGTCCTAGCACCCACATGGTAACTTACAGCCATCTGTTATTCTAGTCTCAGAGAATCTAATGCCTTCTTCTGGCCTTTGTAGACACTGCATGCAAGTGGTGCACAGACATGCACACACAGGCACAACATTTGTACATGTATAAAGTTGTTAAAAAAAAACACACATTTTTACCAGTAGTTACATGACCCTTTATTTCCAAATGGAAAGTTTTTCCATCTTTTTTAAAGTGTCCTTTTCCTTTCAGCATTCCCAAAGACTTAATTTCACTTTGAAGCTACTTTGGCTGAGAGAGTAGGGTAAGATGATAATAGTTACATAGTCTTAAAGATTTGGGGTTTAGAAGTGGTATCATCCTCATCCTTTCTAATTACATGCTGCAGTCCCTTCATTACATAAATTTGCTGTTACTTTGCAACAGTATTATGCTGCTTTGTAAACCAAATAGAAAGATCTGTCACTGCCTTTCTTTATCGTTAGTTGACTAAATGAAATAGCAAGGCATGTGATACCATCTCTAACATAAAACAGATTCTAGAATTTCTGAACTTTATTTCCTTTCCTAAGTAGCTTTCTTCTAAGTAAAGATGGATACATCTTGATTCTTTTAGGTAACTATGCCTACCTAGTCTACACTCCTACACTCTCATTGTAGATATAAATTGTTTACATTACTAGAAATGATTGAAGGACTGAGCAGTGGAAAGAAACATCTTTTTTTATTCTTAGTTCCGTACTAACCTTGGAAGATATGGCTTGCCTCATTGTTTTAATGTTCTCAATTTCATATAACATCACTTATAGTTTGTGAAAGTGTTTTTGACATGCCTTGGTGCTTCTGCCTTATGATGATGTTTTATTTGTAG
Seq C2 exon
GTCAGTATCGCTTGTCCTGAGAGAATGGAGCCTGTCACAAAAATCTCCCATATCCCACCTAGCCGGTGGGCCTTAGTTTGCAACCTGTGCAAGTTGAAGACAGGGGCTTGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037315:ENSMUST00000115384:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(24.5=21.4),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=FE(33.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types