HsaINT0123932 @ hg38
Intron Retention
Gene
ENSG00000102221 | JADE3
Description
jade family PHD finger 3 [Source:HGNC Symbol;Acc:HGNC:22982]
Coordinates
chrX:47033621-47039065:+
Coord C1 exon
chrX:47033621-47033788
Coord A exon
chrX:47033789-47038948
Coord C2 exon
chrX:47038949-47039065
Length
5160 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TGGTGGTATTTTATTTGTAGGTC
3' ss Score
7.47
Exon sequences
Seq C1 exon
GCCTGCTATGGCATCCTCAAGGTCCCAGAAGGCAGCTGGCTGTGTCGCTCCTGTGTCCTGGGCATTTATCCGCAATGTGTGTTATGTCCAAAGAAAGGTGGAGCCCTGAAGACCACCAAGACAGGGACTAAATGGGCTCATGTCAGCTGTGCCCTGTGGATCCCAGAG
Seq A exon
GTAAGAATTCATCCAGGCCCGTGAGACCATTTGCTCCAGGGTGTCCCTGTTCCCCACAGCATTCAGACTGACTCAGGCTCAGTATGGAAATGCTTCATGCTTGCCCATGTTTCTGAAGTAATAGTACTTCCACTTGAGCTACCTCAGATCCTTATTGGATGCACACTTGCATGTAAGCCCATGGTGATTAATATATAGGTGGTATTCCCAGTGGTATTTGGGATAATACCCGAATATATACACGATATTTGGGATAATACCCAAATATATACATGATATTTGGGTATATCATGTATAAATTGATAAATTTGTATGAGAGGAGAGACACAAAAGACCAGGGTGTGAGCAGCAGAATTTTTTAAGGTAAAACTTATATTTAGATGCCAAATTTTAAGTGTAGAGTTTTGTGATATTTTACACGTTTGTATCTGTAACCACAACTCAGACCAAGACATGAAATACCCTAAAAATAGACATAAAGCACCCCAGAAAGATCCTCTATACCCACTTTCCAGTCTCTATCCCCCAAGAATAACCACCATTTTTGTCTTGATCATGATAGATTAATTTTATCTGGTTTTAAACTTCATACAGTATGTATTTTTTTCGGTCTGGCTAACACTCCATGTTGTGGTGTATATCAATAGTTTATTCCTTTCTATTGCTAATATTCCATTGTATGGATATACTCTGATTTATTCATTTTCCTTTGATGGGCATTTGGGTTGTTTACAGGTTTAGGCTATTACAAATAAAGTGAGCAGTAACTCTTTGTCTACTGTGATGATGCCCTTTACTTTTTTATTTTTATTTATTTTATTTTATTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCTATCTCGGCTCACTGCAAACTTCACCTCTCAGGTTCACGCCATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCGCCACCATGCCTGGCTAATTTTTTTTTTTTTTTTTTGGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGCATGGTCTCGATCTCCTGACCTCACGTGATCCACCTGTCTAGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCGATGCCCTTTACTTTTTGAAGCTCTTTTTAGGGCTTACACTCAACACCTGCCAAAGACCTTCTTTACTCAAAATTCAATTTTTTATCATTATCTAGCCTGGTCCTTCAGTTGCTGGTATTTCCTGAGTGGCTACATGTACACTAACTTAATTAAAATGGGGCTTGAAGACATTTCTTCTTATGGCTGCCTTTTTTTTTCTTTAGCTGTGTGGATATCCCACTCATGCCCTCTCTCCCCAGCCACTATCCAAACCAGCAAATTTGTTAGGCAGTTTAACTGCATGACAAGAGAGACTGCAGAATCTAGTTAATGGGGAGCTGACATTATATCAGTAACTCATTCTCCTTTAAGATTTTCTTGTTTTTAATCTTGTTAATATTGGTTCCAGGGGAGTTATTGTCTAATAAAGAAGCTCAGAGTTACACTAAAAGTCCCATATATATACTTTTGTATTCCTATGGCTATAGACATCAGTATTTTAAAAAAATATTTGAATAGTAGTTTCTTTTTCTCACTAAGAACATCTAGACATAAAATAAACTCAGGTTTCTGGCTTGAGAATGACTGTTTTCCAACAGCAAATCCCTCAGCTAATAGAGTAGGCTCTCTCAGCTTATAAAAGTCCAGAACATGACTCAGGAAGAGCTCTTTAAAAACAAAATAGACTTTCTCAGTTATTGACATTCTCTTATGATTTCTAGTTCTTGGTTTCCAGTGCCTTCTGGACTACTCAAGATCTGTTAGTTTCCTGATGTGGGCAGAACCAGTACTAGTTTGGCATCCTTATTTGACAGTTCTTCACCTTTTAAAGCTGTATCTCTCTTAGAAACTCATGTATATATTTGGCGGGGTGGGGGGAATGAAAATACTTTTTACCAGCAGTTGCTTGACCCCTTATTTTCACATGGAAAAGAATATTTCCATCTTTTTAAAAAACATCCCTTTCTGCTGGGTGTGGTGACTCACGCCTATAATCCCAGCACTTTGGGAGGTCGAGGCAGGCAGATCACTTGAGTCCAGGAGTTTGAGACCAGCCTGGGCAACATGGCAAAACCCCATCTCTACTACAAATACAAAAAATTAGCCAGGTGTGGTGGTGCATGCCTGTAGTCCCAGATATTCAGGGGGCTGAGGCGGCAGGATCACTTGAGCCTGGGAGGTCGAGGCTGCAGTGAGCCCTGATCCTGCCACTGCACTCTAGCCTGGGTGACAGAGTGAGACCCTGATTCAAAAAGGAAAACAGAAAAAGCATCCCTTTTTTGATGGGGTTGTTTGTTTTTTTCTTGTAAATTTGGTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGTGAAAATTTTCTCCCATTTTGTAGGTTGCCTGTTCACTCATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACGATGAGATACCATCTCACACCAGTTAGAATGGCAATCATTAAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAAGTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCTTGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAATCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTAGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACGAGTTGGTGGGTGCAGCGCACCAGCATGGCACATGTATACATCTGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAAAGTATAATAAAAAAAAAAAGGAAAAAAAAAAAGCATCCCTTTCTTTTCAGCACTCTCCCAAAGACTTAATTTCACTTTGAAGCTACTTTGGCTGAGGGAGTAGGGTAAGCTCATGATAGTTATGTGGTTTTAAAGACTTTTGTTTTAAAATGTCATCCTCCTCCTTTCTACTTACATTCTGCAGTCTCTTCATTACACGGATGTGCTGTTTTTCAACAATATCATGGTTCCTTTGTAAATCAAATGGAAAGACTTGTCACTCCCTCTGTTTTTTATCCTTAGTTGATTAAATGAAACAACAAGGCATGTAGCACCATCTCTTAACATAATAGATACTCGATTTAGTTACTTTCAGTAGCTTTCTTTGGTTCCTAAGTAAAAGTGTCCATTACGGTAACCTTGGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGTACTTTGGGAGGCCAAGGCAGGAGGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTGAGGTAACATAGCAAGACCTGGTCTCTACAAAAAAAATAATAATAATTTTTAATTTTGTGGGTACATATTAGGTGTATATATTTACGGGATGCATGAGATTTTGATACAGGCATGTAATGCCTAATAATGACATCATGAAACATGGGGTATTCATCCCCTTCAAGCATTTATCCTTTTTGTGTTACAAACAATCCAGTTATGTTCTTGTAGTTATTTTTATATGTACAGTTAAGTTATTTTGACTATAGTCACCCTGTTGTGCCATCAAATAGTAGGTCTTATTCATTCTTTCTGACTATCCTTTTTGTACCCATTAATTATCGTCACCCTCCTCCTGCCCTGTTCCCCCCACTACCCTTCCCACCCTCTGGTAACCATCCTCCTACAGTCTATCTCCTTGAGTTCAGTTGTTTTTATTTTTAGATCCCACAAATAAATGAGAACATGCAATGTGTGTCTTTCTGTGCCTGGCTTATTTCACTTGACGTAATGACCTCCAGTTCTGTCCACGTTGTTGGAAATGACAGGATTTCGTTCTTTTATATGGTTGAATAGTACTCCATTGTATATATGTACCACATTTTCTTTATCCATTCGTCTGTTGATGGACACTTAGCTTATTTCCAAATCTTGACTATCGTGAACATTGCTGCAAAAAATATGGGAGTGCAGATACCTCTTTGATATACCGTTTTCCTTTCTTTTGGGTATATACCCAACAGTGGGATTGCTGGATAATATGGTAGCTCTATTTTTTGTGTTTTTTTTAGAATCCTCCAAACTATTCTCCATAGTGGTTGTACTAATTTACATTCCCACCAACAGTGTATAAACATTTCCTTTTCTCCACAGTGTTTGAGGGTTCCCTTTTCTCCACTCCTCACCAGCATTTGTTATTGCCTGTCATTTAGATAAAAGCCAAAAATATTTTTTTTTAATTAGCCAGGTGTGGTAGAGGCTGTGGTGGGAGGATCACTTGAACCCAGCAGTTCAAGGCTGTAGTAAGCCATGATTGCACCACTGAACTCTAGCCTGAGTGACAGAGGGAGACCTTGTCTCTAAAAAAAAAAAAAAAAAAGAAGAAAGAAAGAAAGAAAAGTAAAAGGTAATCATGCCTAGTCTATACTCCTGCTCTCTCATCCCATATGTGAATTATTTACATTACTGGAAATGAGTGAAGGACTGAGCAGTGGAAATAAGTTTTGTTTATTCTTGATTCCATATTAACCTTAAGAGATGTGACTTACCTCATTGTTTTGATGTTCTTAGCTTTATGTAACATCGTTTATGGTTTGTGAAAGGTACTTCTGGGATGCCTTGGTACTTCTGCCTTATGGTGGTATTTTATTTGTAG
Seq C2 exon
GTCAGCATTGCTTGTCCTGAGAGGATGGAACCGATCACGAAGATCTCCCACATCCCACCCAGTCGGTGGGCCTTAGTCTGCAACTTGTGCAAGTTGAAGACGGGGGCTTGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102221:ENST00000614628:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(20.7=21.4),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=FE(33.6=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development