HsaINT0128592 @ hg19
Intron Retention
Gene
ENSG00000032444 | PNPLA6
Description
patatin-like phospholipase domain containing 6 [Source:HGNC Symbol;Acc:16268]
Coordinates
chr19:7599636-7600463:+
Coord C1 exon
chr19:7599636-7599788
Coord A exon
chr19:7599789-7600394
Coord C2 exon
chr19:7600395-7600463
Length
606 bp
Sequences
Splice sites
5' ss Seq
AACGTGGGT
5' ss Score
4.57
3' ss Seq
TCGACTCCTTGATTTCCCAGGAC
3' ss Score
7.98
Exon sequences
Seq C1 exon
CAATGGCGCCACCATCGGTCCCGGAGTCCCAGTGATGCTCTGTGCCATAGAGCCCCCATAACTTCACTACTACGTGATAGTAAATCCCCGGCAAAAACCAGCAGCGCCTTGCAAGCCCACGCCACCCCAAGCATCCCAGGACTCTTCTGAAAC
Seq A exon
GTGGGTATCAGACGCCTTCCGCGGATGCCCCGGCAGTACTCCCGTGCCTCCCAGCTCCTGGGTCTTCCCCGGGGCAGGCTTGCGTCGGGAGCCGAGTATCTAGGTGCCCACTCCCGGACCCCACGGTTTGCGGGCCCGTTTTCCTGGGGTGGGGCATTCAGTCTTCGACGGAGTAGGGGGTGCGGCCTGGGGGGTGGGGTGGTCAGGCTTGATCAACCCTGCAGAGGGCAGTGACCCGGGAGGAAGTCACCAGGTGCAGAGGACCGTGCCCTGTGGGGACCTGCCTGCAGGCTGCTGACAGTGGGTACCAGGTCGGCCTTTGGCCCCGGGGTGGGGTTGGACAGGCGGGCGTCTGGTAGGCCCTACGCGTAGGCGAAGGGAGCAGGAAGCCGGGGACCCGCCTCATCTCCTGGCCAGGGCCGAGAGGTCGGTTTGCTCCATCCCTTAGTCCCGCAGCGCCCCTCTAGCCTCGCCCCTGGCAGCTGGAGACGCTTCCCCCGCCACCCCAGAGGGCAGGGCTTGAGCTGGGGGCAGGGCTTGAGGCAGGGGAGAGGTGGGCCCAGATTGACGACTTGCACGGGTTCCTTCGACTCCTTGATTTCCCAG
Seq C2 exon
GACTCCGGGCTACCAGATCGGCCGTCCAGCTGGAATCAACCGATGGAGGCTCCGCTGCAAACTGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000032444-PNPLA6:NM_006702:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.156
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF073326=DUF1469=PU(11.8=66.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCATCGGTCCCGGAG
R:
CATTCCAGTTTGCAGCGGAG
Band lengths:
214-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)