HsaINT0128592 @ hg38
Intron Retention
Gene
ENSG00000032444 | PNPLA6
Description
patatin like phospholipase domain containing 6 [Source:HGNC Symbol;Acc:HGNC:16268]
Coordinates
chr19:7534750-7535577:+
Coord C1 exon
chr19:7534750-7534902
Coord A exon
chr19:7534903-7535508
Coord C2 exon
chr19:7535509-7535577
Length
606 bp
Sequences
Splice sites
5' ss Seq
AACGTGGGT
5' ss Score
4.57
3' ss Seq
TCGACTCCTTGATTTCCCAGGAC
3' ss Score
7.98
Exon sequences
Seq C1 exon
CAATGGCGCCACCATCGGTCCCGGAGTCCCAGTGATGCTCTGTGCCATAGAGCCCCCATAACTTCACTACTACGTGATAGTAAATCCCCGGCAAAAACCAGCAGCGCCTTGCAAGCCCACGCCACCCCAAGCATCCCAGGACTCTTCTGAAAC
Seq A exon
GTGGGTATCAGACGCCTTCCGCGGATGCCCCGGCAGTACTCCCGTGCCTCCCAGCTCCTGGGTCTTCCCCGGGGCAGGCTTGCGTCGGGAGCCGAGTATCTAGGTGCCCACTCCCGGACCCCACGGTTTGCGGGCCCGTTTTCCTGGGGTGGGGCATTCAGTCTTCGACGGAGTAGGGGGTGCGGCCTGGGGGGTGGGGTGGTCAGGCTTGATCAACCCTGCAGAGGGCAGTGACCCGGGAGGAAGTCACCAGGTGCAGAGGACCGTGCCCTGTGGGGACCTGCCTGCAGGCTGCTGACAGTGGGTACCAGGTCGGCCTTTGGCCCCGGGGTGGGGTTGGACAGGCGGGCGTCTGGTAGGCCCTACGCGTAGGCGAAGGGAGCAGGAAGCCGGGGACCCGCCTCATCTCCTGGCCAGGGCCGAGAGGTCGGTTTGCTCCATCCCTTAGTCCCGCAGCGCCCCTCTAGCCTCGCCCCTGGCAGCTGGAGACGCTTCCCCCGCCACCCCAGAGGGCAGGGCTTGAGCTGGGGGCAGGGCTTGAGGCAGGGGAGAGGTGGGCCCAGATTGACGACTTGCACGGGTTCCTTCGACTCCTTGATTTCCCAG
Seq C2 exon
GACTCCGGGCTACCAGATCGGCCGTCCAGCTGGAATCAACCGATGGAGGCTCCGCTGCAAACTGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000032444:ENST00000221249:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.086
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCATCGGTCCCGGAG
R:
CATTCCAGTTTGCAGCGGAG
Band lengths:
214-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development