HsaINT0128605 @ hg19
Intron Retention
Gene
ENSG00000130653 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:24768]
Coordinates
chr9:140387465-140389598:-
Coord C1 exon
chr9:140389485-140389598
Coord A exon
chr9:140387535-140389484
Coord C2 exon
chr9:140387465-140387534
Length
1950 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCTCCTGTGTCTGCCCGCAGGTG
3' ss Score
12.66
Exon sequences
Seq C1 exon
GTGGAGACACTGACCCACCAGGCCCGGGCGACCACGGTGCATGCCGTTCGGGACTCAGAATTGGCCAAGCTGCCGGCAGGAGCCCTCACGTCCATCAAGCGCAGGTACCCACAG
Seq A exon
GTGAGCATGGCGTGGGTGAGGATGCGGAGCGGATGAGGGTGTGGAGTGGATGAGGGCATGGAACAGGTGAGGGCGGAGCGGGTGAGGGCACAGAGCAGGTGAGGGCGCGGAGCAGGTGAGAGCGCAGAGCAGGTGAAGGCGCGGAGTGGATGAGGTCACGGAGCAGGTGAGGGCAGGGCGCAGGTGAGGGTGCAGAGTGGATGAGGTCACGGAGCAGGTGAGGGCAGGGCGCAGGTGAGGGTGCGGAGTGGATGAGGTCACGGAGCAGGTGAGGGCAGGGCGCAGGTGAGGGTGCGGAGCTGGTGAGGGCGCAGAGCAGGTGAAGGCACAGAGTGGATGAGGTCATGGAGCAGGTGAGGGCAGGGCACAGGTGAGGGCGCGGAGCAGGTGAGGGTGCGGAGTGGATGAGGTCACGGAGCAGGTGAGGGCAGGGCGCAGGTGAGGGTGCGGAGCAGGTGAGGGCGCAGAGCAGGTGAGGGCGCGGGTGAGGGTGGTGCGGGTGAGGGTGGCACAGGCCATGTCCCAAACTGTGCCCTGAGTTGTGGTGATCATTCGGTCTACCTACACATGGATGGAAAACGACCTGGAGGAGGTGAAGATTAGAGCCCAGCTGGGTGGGGGCGGTGACGGTGAGCAGGAAACCTGGAGAGGCGCCCAGGCTGCTTCCCAGGACAGTCGTGCAGCTGCCTTCTTGGTGGCCTCTCTACTCATGAGTGATGTGGGTGTGGCAGAGGAAAGGGAAGTGACTCTCACTCTGAGATCTGGAGAAGGACAGGGCGGGCTGCTCGGAAGTGCAGGGTCAGCGGTGAGGAGAGCGCCCAGGAAGGACCGGCAGAGGGGCCTGAAGGGCAGGTCTGCAGTTGTTCATCAGCCAGCACACGGATCCCAAGAAGTTTTTCATTCTAGAACAAATGGAAAGGGGGTGCAGGTGTGGCCCACAGCATGTTGCAGGGCCTTTTACGGCCAGTGCCTCTCACCACCCCTGGGGCTCATCCTGAGAGGCCACCACTGCCCTCCCTCCACCGCCTCCCCTCAGGTAGCGCTTCTCCCACTCAAAGCTCTTGGGCCATGGTTCTCCTGCCCGCAGCTCCTGGATCCTGGTTCTCCTGCCCGCAGATCCTAGGTCCTGGCGCTTGCTGTACTTGCCCACTTATGGACCAGGAGAGCCTGGCGGAGCATGTGAGTGCAGCTCACAGGGCCAGCAGGCTCCAGGGTGGCAGCCACAGTTGCTGGGAACAGCAGGGAGCCAGGCCACTCCTCCATCTTTGTCCTGGCCTGCAGGGTGGGCCTCGTTCTCATGAGCGCCTCGGAGCAGGAGCCCTGGCCCACCCTTTAGAGGCCGCTGCAGGGCTCCATCCAACCAGCAGCTTCTGGGGGACAGTGCGGGTGAAGCCAGTGGGTCCGCTGTTGTGGGGCCAGCTTTGCTGTACAGTCAGCCCCTGGGCAGGGTCCCTGCAAGCCAGCAACCCCTGGTGTGGGGACCGTTTGGTCCAGTCAGGACAAATGTCCCCAACCGTGCCCTGAAGCAGGCTTGGCACCCAGAAGCAACAGCCACAATGAGCCCTCAGTTCCAGAGAAGCCTGCCAGCCTGCCCTTGTCCTGCCTTCAGGGTCGTGGGTGGCTTGCTTGGAGTTGTCTGCCTGCCCTGAAGTGAGAGTGAGAGGCTGGCCTGGGCTCACGGTCACAGAGGACATACCCCTTGTACCTGCTGGCCTGGCAACCAGAAAGGCAGCCGTATGGCTTACCTGGGCATCAAGAAGGCTGCAAGGCCTAAACAGCCATGGCCCAGCACGTGGCTTGTGAGTCATGTGCAACTCAGTTCATGGAGGTTTTGAAAAGCAGATCCAGCGCCATTGGCTGAGTCTCGCTGTTGTTGAGCATCACTGTCTTTGGTTCCCAGTGTTTCTCAGTTTAAAACGTGTGGCTCTTGGCTCCTGTGTCTGCCCGCAG
Seq C2 exon
GTGGTGACTCGGCTGATTCATCTCTTGGGTGAGAAGATCCTGGGCAGCCTCCAGCAGGGACCTGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130653-PNPLA7:NM_152286:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(40.7=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)