BtaINT0114822 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105645757-105647050:+
Coord C1 exon
chr11:105645757-105645870
Coord A exon
chr11:105645871-105646980
Coord C2 exon
chr11:105646981-105647050
Length
1110 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGTTCTTTCTCTGCCCCCAGGTT
3' ss Score
13.08
Exon sequences
Seq C1 exon
GTGGAGACACTCACCCACCAGGCCAGGGCAACCACAGTGCATGCTATTCGGGACTCAGAGCTGGCCAAGCTTCCCGAAGGAGCCCTGAACTCCATCAAGCGCCAGTACCCACAG
Seq A exon
GTGAGAGCTGTGAAATTGTGAAGTCAGAATGCCAGAACCGGGTCAAGACCAAGACTGCTCCCATCAGGCAGGCTGCAGGAGGAGGGCCGGCCCCCGCTTCCCCAGACAGCAGTCCCCGCCGGCTTCAGGGCAGGACTGCAGTGCCTGGCAGTCAGCCGGGAGGCAGAATGAGGGCAGCCTGCCCTGCTTCTGGTTTTCTGATGTCACTTCCCTGCTTCTGAGTCTTGAGAGTGCAGACAGGGAAATGGAGAGCCTGCACCTTAGCACTTTGGAGGAAGAGGCAGGGCTGCTACTGGAGAGTCACAGGAGTGGCCCCTCTGAAGGCTTAGGCCTGATCCGTCCCTGTGAGCCCGTGTGTGAACAAGTGAAGCAGCCCCCAAGTTATTTATGAAGTTAATGTGACTTTAATACCAAAACTTGATAAAAATAACAGAAAATGGATCATTTCTTTTAGTACCATAGTTATAGCAGGTCAACTATTAATGCAATAAATATGTGTGATTGGAGTAAGCTGACAACGGCTTCTCTTTTCAAAACTGATTCTGTACAGCATGCAAGAGCCACAAAAGCAGGTTTCCTGTTTCCTTCTCTGCCATCTTGCAAACTGTAGCAATTAAAAGACTTTTCAACTGAGTTTATCCTCATGCAAAAGCGCTTAGAAGTAAATTATACATACTTTGACATTTCAACTTTATTTACTTGAGTCTGCAACTCAAAAAAATTAGAATTAATATAACCAAACTAGCATTATTATATTTAAAAGGTAGTTCTTCGTGGATGTCATGTAGTACCAGCCCATGTCTGGCCAGAGCTGGCACTCAGCAGCCCACAATGACCCTTGGCTCTGGGGACGTCCCTTGTGGTCTGCCTTTGGGGGTTGTGGCTTCCCCATTTGTCCGTTTCCTGCCTGGGGAAGACAGGGGCCCTCAGCCAGGGCAAGATCGCAGGCCACGTGCCTGCCCACCCGTCTGTGACCAGACAGCGGCCGTGTTACCATCCACTGCCCGGAGCAGTGTACAGCCGAGGCAGTTTTGAAACCATGGATCTAAGGTGCTTGGCTTTATGGTTTACAGTGTGTGGTTGAGGTCTCTGTTCTTTCTCTGCCCCCAG
Seq C2 exon
GTTGTGACTCGACTGATTCGCCTCTTGGGCGAGAAGATCCTGGGCAGCCTCCAGCAGGGAGCTGCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126:ENSBTAT00000016089:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.494 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(10.8=17.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development