RnoINT0114527 @ rn6
Intron Retention
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2225103-2229016:+
Coord C1 exon
chr3:2225103-2225216
Coord A exon
chr3:2225217-2228946
Coord C2 exon
chr3:2228947-2229016
Length
3730 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCTTCTTTTTCTGCCCCAAGGTT
3' ss Score
9.7
Exon sequences
Seq C1 exon
GTGGAGATGCTAACCCACCAGGCCAGAGCAACCACAGTGCATGCTGTCCGGGACTCAGAACTGGCTAAGCTGCCAGCAGGAGCTCTGACGTCTATCAAGCGCAGGTACCCACAG
Seq A exon
GTGAGGCTGCTGCTGCACAGGTGAGGTGAGCCTGCTGCACAGATGAGGTGAGCCTGCTGCACAGGTGAGCCTGCTGCACAAGTGTGGTAAGCCTGCTGCACAGGTAAGGTGTGACTGCTGCACAGGTGAGGTGAGCCTGCTGCACAGGTGAGCCTGCTGCACAGGTGTGGTAAGCCTGCTGCACAGGTAAGGTGTGACTGCTGCACAGGTAAGGTGTGACTGCTGCACAGGTGAGGTGAGTCTGCTGCACAGGTGAGGTGAGTCTGCTGCACAGGTGAGGTGAGCCTGCTGCACAGGTGAGCCTGCTGCACAGGTGAGATGAGCCTGCTGCACAGGTGTGGTAAGCCTGCTGCACAGGTGAGGTGAACCTGCTGCACAGGTGAGGTGAGTCTGCTGCACAGGTGTGGTAAGCCTGCTGCACAGGTGAGGTGAGTCTGCTGCACAGGTGAGGTGAGCCTGCTGCACAGGTGAGGTGAGCCTGCTGCACAGGTGAGGTGAGCCTGCTGCACAGGTGAGGTGAGCCTGCTGCACAGGTGAGGTGAGCCTGCTGCACAGGTGAGGTGAGCCTGCTGCATAGGTGAGGCTTCTAGCTGTACTTCTGGCCCAGGTGAGAATTTAGTCAAGTATACACAGAAACACTGGAACAGGTAGGGGGAAAGCTGTAAAAGTGGCACACAAGTCACGTTCTCAGATGAAGACTCCTTTATCGCTATTGTATGACACTATTTCTGGGGACACATGAGCAAAATCCAGACTTACCTCAAATACAGAACTGGTAATAGACAAAGTAAGGACACTGCCAAAGTGCAACTTGATAAACCAGTGATTTCTGTTGGGGTTCCTCTCAGGAATATGGCGAGAAGTTACTTACAGATGTAGAAATGACTCAAAGACCACTGCATCACAGAGGCCTACCCCAGCATGGCTGATGGTTCACAGAGCTGGGAACCTAGAGCCTGCAGGCAGCTCAGCAGGTTATACAGTGTCTTTTCCAGGCAGATCAGATGACTTGAGCTTCTCTCCGGCTGCTCTACTTGTCAGCAGCCCTTACTGCTGCTGTGCACTTAGGTAGAGAAGAGACCTAGTCTGTACGGTAGGTTCCAGGAGCCTCCTGCAGAATAGAGGTGCCCCGCTGTAGAATCTCCCGTCTTCGGGAGCTCCCCTCTGAGATGGAGGCTTCCTAGAGGAGGAGATTACTGCACCACACCACAGCTTAGGACGGCAACTTGAAGAGAGCTTTGGTAGCAGCCAGGGGTTGGCAGAGGAGGACTGAGGCTGCATCTCTGAGCTGTCAGTCAGCTGCCTTTTCTGTCCTCCCTGCCTGTGAGCGACAAGGTTATCACAGGAAAGAAGGGTCAACCCTACAGTTTGGACTAAAACCCCGGGGTCCTATAGTGGTGTTTCCACTCAGCATTCTGTCCTGAGTCTTAAAACTGCTTCCTAATGTCTATGTTTGCTTTCTTTCCAACTCCCCACTTCCTCCTCTTTCCCTTCTCTTTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCTTCTTCTTCTTCCTCCTCCTCCCTCCCTCGTGCATGTGTGCATGCGTGCACTGGGGATGAAACCCAAGGCCTTGTTGCTTGCTAATTGTCTATGGATGAACTAGTACAGAATACCTTTCTTGCGAATGGTCCAGCAGTCCCCACTGGACTTCAGTCTGTTTGTTCCCCAGTTGGTGGGTATTGGAATGACTCCAGTCTAGGACTGTCAGGTTTAAAGGGCCGCTGCACACATTCTTGACAAATGCTATAAACACTCCTTTGTTCAGTTGCTAGGTCACAAGATGATGTGTGTTTGCAAACTGCAGACAGCTCTCCAGAGTGACACTGCTTCACAGCCCAGTGTGATGTGGCTCCTGAGCCTTGAGTGCTGGGCACACAGGCAGCTTCTTGTACCAACAGCTCTCATCGGCCTATCACAGTGCTATACCTTTGTGTGTCCTCCTATCACAGTGCTATACCTTTGTGTGTCCTCAGTCTTTAAGATGCCAGACACCTTTTTGTGAACTCATTGGCCTATTTTAAACCTATGCCACTTGACGCAGAAATAATCTTTTAAAAGATTACCTTTAGTGACCAGACATACAGGTCTTATTTTAATTACAATACTTGGGAGTCAGAGCCAACCAAAGTTAAAGCCAGCCTAAGTCTACATAGTAAATTCCAGGGCAGCCGGGACTACAATAGTGAACCCCTGTCTCAAAAAATAAGTTAGTCTTACTTTAAATTTGCTTTTTTTTAAAGCTTTATTTATTATATATAAGTACACTGTCCCTGTCTTCAGACACACCAGAAGAGAGCATCAGATCCCATTGCAGATGGTCGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAAAGCAGTCAGTGCTCCTAACCACTGAGCCATCTCTCCAGCCCCTGCTTGTTCATTTTTAAATGTGACAACTTTACTTGTTTATTTGTGGTGCTAGAGATTAAGCTCAGGACCTTGCATAAACCATGCAAGCACCATACCACTGAATTGTATCCCCAGCCCTTTTCAATTTTTATTTTGAGACAGGGTGTTGCTAAGTTCCTAGGCTGGCCTTGAACTTGTCTTATGGTCCAGGCAGGACTCAACTTTCCTCATAGACCAGCCTCCCCCTGCTGGTATTTAGTGTTTTGCTGGTTATAGGTGTTTGTTTTGACCCCTGGCCTCTAGAGAAACATTCAGGTACTTAGAATTCCCTGTGTGCTCCTGAGGGGTTGTTTATGGAGTCGGACTGCTGGGGCAGGTGACCATCTCCTCCTGGCTCACTTTCAGAGTTCTCTGCTCAGACTGGTTTTTGCTTTGTATGTGAAAGTCTGGACAGTTTCATTTAGATCTAACATGGGCTCTGACCCCACCACCCTGGGACAAATAAACAGCCCTAACTTAGCTTCCTAGAGTGACCCTGGTGCCACCTAATTGACGTAAAACCTAGCAGGTGCCCCTGTCTGAGATCAGGCTGTCTTTGCCATGCCTGCGGCCATGGATGGGAGGTCCTTTAGGTCATTTGCCAGCTGGACTGTAAGGCTTAGGGCCACAGAGTGTGTACTCTGCTTCTTTTGTGTTTCACCACCCTCCCCCCAACATGCCATCCCCCCCCCCCAAGCTCCTTTTCCTTGGTGACTTAATTTCTTTTCCTTTTGTTGTGATAAAATACCATGACAAAAGAAACTCAAACGAATGCATCTTATTTTGCTCAAGGTCTCACATTCCTGTCTGTCTTCCTGTCTGTCGTAGTAGGGAAATCCCAGTGACAGGAGCTAGAGGAGGCATTTGCCACACTGTATTCATAATCCAGAACAGGAGCAACGAATGTGTGTGGCACGGCTCACCTCCCTTTCCTCTTAGAGAACCCAGGTCCGATCCACCACTGAGACAGGTCTTCCCACACCTAGCGTAGTTGCAACAATCCCAGTAGGCATGTAGGGCACAGGCCCTAGAGGGGCCCATGTCTGTGTTAGCCATGCTGGCCATACACAGTCTCATCTGGAAGCCTGGACATCATATGAGCCCTTGCCGTCGGCAGCCCGTGTTGATTTCCAGTCACTGACAGGTTTGGAAAAGCAAGCCCTGTGCGCTGTTTAACGTCATGTGACATTTCCTGGTCCCAGCATTTCACCCTTTAAACCCGACTTCTTCCTTCTTTTTCTGCCCCAAG
Seq C2 exon
GTTGTAACCCGACTGATTCATCTCTTGGGTGAGAAGATCTTGGGCAGTCTCCAGCAGGGATCTGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190:ENSRNOT00000011633:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(40.7=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]