GgaINT0004581 @ galGal3
Intron Retention
Gene
ENSGALG00000007881 | PNPLA6
Description
NA
Coordinates
chrUn_random:60654762-60655662:+
Coord C1 exon
chrUn_random:60654762-60654875
Coord A exon
chrUn_random:60654876-60655586
Coord C2 exon
chrUn_random:60655587-60655662
Length
711 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TCCCTGCTGTTGTCCCACAGGTT
3' ss Score
12.67
Exon sequences
Seq C1 exon
GTGGAAGCACTTACCCGGCAACCCCGTGCCACCACGGTGCACGCGGTCCGGGACACGGAGCTGGCCAAGCTTCCCGAAGGCACCTTGAACAACATCAAGCGTCGGTACCCTCAG
Seq A exon
GTACAGCCAAAATCTTGCCCCGCTTTGGGGGAAAACTGGGTTGTGCTGGGAGTCCCAACTGTATCCCCACAGTTGGATGGGTTAGTGGGATGGATCCGCTCTGAACCCAGAACAGGGAAGGGTTGAGCCATGTAACGCTGAAGGCTGCCCCAGGTGAAGCCGTGACGCCTCACCAATCTCAGAAGTATAGGATATTTTAGAGGTTGGAGAGATACTGGTGGCTGCAGCAGTGGCATTTAGGTGACTGCAGTGTGAAGGTGGTCACAGCATGGCAGTGGTCGTAGCGATGGCCATGGGGTGGAAGTGGTGATGGTTCTGCATCGTGGTGGTGGCAGTGACACAGCCCCATGGCATGGCAATGGCCACGGTCTGGTGGTGCCCACGGCTCGATCCTGCTGAGATCTGGAGACCTGCCACGTTGGTGATGCCTGTCCCAGGGTCTGCGCATCCCTCTTGGGGAAGGAGCACGTCCGACATGCCAACTAATGGCTCTGATGCTCATTAAATCCATCTTAAAGAATTAAAGTAGCGGTTAAGGCTGGTGGAGGAGAAAGACTGGTGTCCTTTGGGGACGTTCTCCGAGATCCCCATGGTAGTCATGACAGCACCCGAAAACACCCATGGGATACTCTTCTGATCTTGCTCCATGGTGCTGGTGTGTCTCTGGCCGAGGAACCTGTCCTGATGGCTGTCCCTGCTGTTGTCCCACAG
Seq C2 exon
GTTGTCACCCGTCTCATCCACCTCCTGAGCCAGAAGATCTTGGGAAACCTCCAGCAGCTCCGCGGCCCCTTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007881:ENSGALT00000012800:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(40.7=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]