BtaINT0114790 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17637316-17637776:+
Coord C1 exon
chr7:17637316-17637429
Coord A exon
chr7:17637430-17637700
Coord C2 exon
chr7:17637701-17637776
Length
271 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
GCCGGCCTCCAACGCCCCAGGTC
3' ss Score
4.96
Exon sequences
Seq C1 exon
GTGGAGGCGCTGACAAGGCAGCCACGTGCCACGACGGTGCACGCGGTGCGCGACACAGAGCTGGCCAAACTCCCCGAGGGCACCCTGGGCCACATCAAACGTCGATACCCGCAG
Seq A exon
GTGCAGCTCGTTGGGCTGGGGGCTGTTTTCCTAATGGAGATGGGACAGATGAGTGGGGGTGTGGCCCTAGAGAGGGCGGGGCCTAATGGGTGGGGAGGGGGTTCGGGTGCAGATGGAGCCCTAGGGAGGAGCTGAAGCCTCCAAGTGAGGGGCGGGGCTCGTGGGGTGGGGCCCAGGTAACGGACCCAGGCGCCCTGGTCAAGAAGGAAAAAGTGGTACTTGCAGAGTTGCTCCTGCAGTCTAACTGGACCGCCGGCCTCCAACGCCCCAG
Seq C2 exon
GTCGTGACCCGCCTCATCCACCTGCTGAGTCAGAAGATTCTGGGGAATTTGCAGCAGCTGCGAGGACCCTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137:ENSBTAT00000007351:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(40.7=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGCGCTGACAAGG
R:
TGGGAAGGGTCCTCGCAG
Band lengths:
189-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]