HsaINT0130750 @ hg38
Intron Retention
Gene
ENSG00000108819 | PPP1R9B
Description
protein phosphatase 1 regulatory subunit 9B [Source:HGNC Symbol;Acc:HGNC:9298]
Coordinates
chr17:50140093-50141373:-
Coord C1 exon
chr17:50141269-50141373
Coord A exon
chr17:50140229-50141268
Coord C2 exon
chr17:50140093-50140228
Length
1040 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
TGATGCCGGTGCCCCTGCAGGTT
3' ss Score
9.14
Exon sequences
Seq C1 exon
GATCCAGGTGAATGATCTCCTGGTGGAGGTGGATGGAACAAGTCTGGTGGGAGTGACCCAGAGCTTCGCGGCGTCTGTGCTCCGGAACACCAAGGGCCGAGTGCG
Seq A exon
GTGAGAGCCCAGAGGGGTGGGGCGTGGGAGCGGGCAGGAGGTCCTCGTCCAGGCACTCCGTTCACCTGCCTTAACAGCCAGTTAAGGTTCTGGTGGCCCAGCTCACAGAGGTTCTGCTGACTCCTTGGCTGCAGGAGTTGCTGTGCCTGGAGTCCCTCGCCTCACACCTGCCTTCTCATCCCAGCTCCCTGGCAACAGCTGGCCACCAGTACTCAGCCTTCCTGGCCCACTGTCCACCAGCCCTCCAAACTGTCCTCTAGGGCTTCTTCTCCTTCCCCCTACCTGTCCCTGACTCACTGACTGAAGAACCAGGACGTCCAGGGTGAATGCTAACCATATTGGGGTCCCCTCATTGGGACCTCATGCCCCCCACCCCGACCAGCCCTATGTCATCCTGGGAAGACTCCGCCCCAGGCCTGTAACCAAGGGGACTGGATCAGAAGCTCCCTGTGTCCACTCTACCTTTGGCTTAACATTCAGGGATCACTCCCTGCCCCCCTGCAAGAGGGGTACTACCCCCAGGAAAGGGTGGTGGAGAGAAACAGGATGTGGGTGGCCACCGGGAGGAGGGGCTGGTGCCTGGAAGTTCCACTATTTCCTCTCCATCCTAATCTCCAGTTGCCATCATCCCGCCCCTTCCTGAAGCTCAGGGGCTTGGAGCATACCCAAGAAACACCTCCGCAGCCCATCCCTGCTGGGAGGGTCATCTTCACCTTTCCCTGCCTCATTTTCTCCCCTGTGGCAGGGGAAGAGCCTCCTCAGTGCATGTCCCCTGCAGCACAGCCTAGAGGTGGGCTGACATTCTCCCTCCCGCAATACTGGCCAGAGGGGTGAATGGGCCTTCCTGCCTCCCTTGGGAAGGAAACCTGATAAGGGCCCTCATTCCCCCATTCATTATTAACACTGCAGCCTTCGGACTCAGCCCTCTCATCTCTCCTCCCCTGGGAGGGCCTGAGTTTGGAGAGGGGAGCATCAGCAGGGAGGATGATGCATTACCTGGCTGAGGACAGAGGCAGCGGATGATGCCGGTGCCCCTGCAG
Seq C2 exon
GTTTATGATTGGCCGGGAGCGGCCGGGAGAGCAGAGCGAAGTGGCCCAGCTAATTCAGCAGACTTTGGAACAGGAGCGATGGCAGCGGGAGATGATGGAGCAGAGATACGCCCAGTATGGGGAGGATGACGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108819:ENST00000612501:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(40.7=100)
A:
NA
C2:
PF0059519=PDZ=PD(4.7=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGTGAATGATCTCCTGGT
R:
TCCTCGTCATCCTCCCCATAC
Band lengths:
238-1278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development