HsaINT0131367 @ hg19
Intron Retention
Gene
ENSG00000019485 | PRDM11
Description
PR domain containing 11 [Source:HGNC Symbol;Acc:13996]
Coordinates
chr11:45226262-45241308:+
Coord C1 exon
chr11:45226262-45226329
Coord A exon
chr11:45226330-45241120
Coord C2 exon
chr11:45241121-45241308
Length
14791 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTGTCTCCCCTCCCCACCAGGTA
3' ss Score
11.35
Exon sequences
Seq C1 exon
ATTGTGGACAAGAACAACCGCTATAAGTCCATAGATGGCTCAGACGAGACCAAAGCCAACTGGATGAG
Seq A exon
GTGAGCCCTGCTCTGCTGATGTCCCGGGGGTCTTGCCTGGCCTCTGGAAAGGAGCCAAGGGAGTGTGTTGGACCTGTGGGAGCTCCAGTGGTGGAGACTTCTGGAGGCTGCCGTTTGCAGGGTTTGGATGCATCTAGCTCTGAAGGACCCACCTTTTCCCCTAGGCCTCCATCAGGGGGCTCTAGAGGACGGCGTGTGGTCAGGCCGTTGGGATGCAGGGACCGCTCGGGCTGCTCACTTGCCAGTGTGTCTGGAGGTCCTGGGCCCCAGGCTCCTGGCAGCATTCCTAGGGAGGAGGAGGAGACTGTCCCCCACCTAGGACTGTGACACCTCAGAGCAGGCTCCTGCAGGGGTGGTGTGAGAATCGTCCCAGTGCAGCCCCAGCAGTTGTTTAAACAGCCTCCATGGAAGAAAGGGCTCTGACAAAGTCTTCAGCTCAGTTTTTGACAGTGTTGCTGCCTATGTTTGAGTACTTTGAAGTGTCAACTTTACCCTGTTCCGGTGTTTGGGACAGAATTTTGCACCAGAAGTTTTCTTAAATGCCAACCAGAGGAGGCAGGAGACTGGCCCCAGGCAGGGTCACCCAGGGATGGCTGAGCTGAGCCCAGAACCATGGGTCCAGCGTGATGCTGATGGTCTGTGCCATGTGCGAGGGACTCTGCCTGGTGGGGTTTGTGGACAGGGGTGGGAGATCTGACATGCCTTGTTGCCTGCTTGGTGGCCTCTCTCTGGGACCTAGGAGCACTGGCTGGAGATTTGGATCTGGGTGGGAGGGGAAGGAAGCCTCAGATGTCTGGAGTCAGGGGCACAGCCACACCATGGGCCTGGGGCCCTCTGCCGGCATTTGCACAGTTTTCTGACCCATGAGGCCTTGAGGCTGATGGTGGGATTGTACTTGGAGAGAGGGCAACTTCCTAAAAAGGAGTGTGCTGTCTTAAACTCGGAGACTTTCTAAGCAAATGAGGAGAAGCAGGTTTGAGGCGTAGAGTATGTGATGAGGGCTCCTGTGTCCTTCCCAGTGGCTCCACTGCCCACCTATACTCCTATCAGAGAGTGGCTGAGCAGCAGTTCACACCTCCCAGATTACTTTAGCGTTCGCCCTCTTATGGGTTAGGGAAGGTGTTCTCATTGCCGTTTGATGGGTGCAGAACAGAGGCTCCAGAGACCAGCGGGCCCCCTGCCTTGCAGTGTGGAGAATAGCACCGACTGCCCCCAACCTCCTTGGACACAGCTGATCCGACACTGCCCTGAAAGTGGCCCCAGGGAGGTGGCTTGACACCCTGACTGCCTTCTCTTCTCACTGCCACGGGGTCCAGGTCAGCTGAGCACTTACAGTTCATCACCTGTGTACTGAGCACCTAGTTTGAGTCAGACTGTGAAATGGGTACCAGGGTGGATCACCCAGCCCTGCCCCACCACACCCCATGCCCCACCCCCGCTGGCCCTTCCCGGGCTCACACCTCCTACCACAGAGGTGACTTTCCAGTGTAGTTTTTGCACCGAGGCACAATGTGCTGCAGAGGCCCAGATGAAAGAGGAGGGGTTCGTTGACATGGGCCTTCAAAGGGGCCAGGATTGTGTCTGGGGACACTGGGTTGTGGTGTCTAGTCAGGCTGTTGGGCGGCTGCTCAGTTTGGACCCCAAGCCTGTGCTGCTGTGCTGCCTGCCCTGTGGCTGCAGCCTGGCTCCAGGCAAGCAGGGGAGACCGTGCGTGTGTCCACTTGGGAATCAGGCTTTCTGTGCTATTGCTTTTAAGGCGCCGGGAGCTTTGCCCATAGAACCGAATCTGTTCCACTCTTTCACCCATCTCTGATCTTTCCCCCTGGGGACAAGGCCTTCTCAAAACCCCAAAAAAGGGGAGCTATCATCCAAACTAACTTATCTATCCTCTGGCACCCCGCAGATTGTGACTTAATTGGGCTGGGGATTGGCCTTGGGCCTTGGTATTTTTAAAGCTAGTGATTCTGATGTGCCACTAGCATTGAGAACCACTGCTCTGTACAGATCTTCATGCCACAGTGGTCAAGCTGAGAGCAGGGCAAGGTCTTGCTTAAGAGCATACAGTCAGGGTAGCAGAATCAGGATTTGAACTCCTGGCTCTGTAATCCTAGGTCGGTGTTCTTCCTGCTTGTGCACAAGGGACCAGGTGAAGCGTGGCTTCCTGGGCCTGGATGGGCACTGGTGAGCAGGGGTTTGGGGGTTTCTGCTACTGCCACCTTGCTAGCATGGTTTCTGTCCTGTTCTGCTCCCAGCCTGTCCTGATTCAAGATGGCATCTGGGTAGTCACAGCTGGTGGGCTCTCATCTTATGACCACTCAAAGAGCAGGTTTGGGTTAGGGATGCAGTTTGTTGCCACGGAGACGCCCCTCCTGTTGCTGTTGGAGTGACGGGAAAGCTGTTAATCCTGGGAATCCTCCTTTCCCTTCATGTCCAGCTTCCGTGGTGTGGCTCTTTCTGACTTGCAGATGCTCTCCTTTGCACTGTCATGGCACCGCTTGGGGATGATTGAATGGACTCTGTTAGTTTCTTAACAAAATTAATGGTGGGCCAGGAGGCGAATGGGCACTGTCGTGTTGAGCTTATCTTTATGACAGCCCCATCTAGGTGATCTGTCTGTGGTGGTTCTCAACCGAGCACTATTTTGTGCCCCTGGGGGCATTTGGCAAGGCCTGGAGACATGTTTGATGGTTGGATGCTATCAGATAGAAGCCAAGGATGTTGATAAAATCCTGCATTACACAGGACACCCCTTCCCCCCAACGAAAAATTTTCTAGCCCCAACTGCCAATAGTGGCAAGATTGAGACACCCACATTAAGTCCTCCTGATAGCCCTGGACAGTGACACTAGAATTGTCACCCTAGTTTTATGGAGAAGGAGACTGGGTTCACACGAGTCCCATGGCTTGGCCCAAGGAGACTCAGTCTCTAGTTCCAGGTCTAGTCCCATATTCCTGCCACCATCTTGGACTGGGTAATGAGGCCCCCAGCCTTCTTCCCATCTTCTGGGCCCTGGTGTTTTGGGTGCTTGAGTAGGAAGGTGAGGGCTGAAGGATGTTGGTGCCGCCGGCCTTCCCCTCTTGGTTTCAGAAGGAAACCAAGGAGTGAATGCGCTCTGAGCTTTCCTCCATACCCTCATGTCCTCTCTTGGGTGGATTTTTTCACCTTTTATCACTAGTTAAAAGGGTGACAGAGCCACGATGTGGAGAAATCAAGTTCCAAAGCCAGAGCAGGAGCCAAGTGGGATGGAAGGGCCATGCTGTGCCCCTTGCCCAGGGCCTCTGGCTGCTCAGTTGAGAGGGAATCCCAGGTCCCCCTGGTGTCCACCAAAGTGGAACTTGACTCCCTCAGGACAGTCGTGGGCTTCTCAAATTCTACCAAAAAGTCACAGCAGCCCACCCCCGAAGAAAGCACTCCCATGGGAAGGAAACCTGTTTGCCTGCACATATGCAAAGGTGGGGGCTTGGAGAACTGACCGGGACGGGGAAGGGGAAGAGAGCCACTAGGCAGAATAAGCTTTCTGTGGCCACACCCTAATCATGGCATTGTCACTGCTACACCCAACGGTAGCCAGTGTAAATAGTTTCCCTGGTTACGTATTCTTCCGAGCCATTCATTCAGCTGTAGGGCTGTAGGTAAATATCGCTTTATAGAGGCAATGGGCTAATCCTAATTTCAATAAGATCCTTTACTGCTATCTTTAAGAGATTTTAAGCCCCTTACATCATGATGTGTTTCCCTCCTTAGTAATAAACCCGAAGAGTTGTGGTTGTTATTCTGGACAGGGAGAATAAGGTGTGAAAGGTTGAACATGAACTGCCCTAGCTCTCACCGCTAGTAAGAGCTAAAGCAGGCCCTGAAACCAAGGCCTTCGACTCTGAGTTCAGTGCTCCCTCCCATGTAACGCCGTCTCTTCTTTCCACCCTCCCCTCCGAGGAGTAGTGGAAGGGACCTCTCAGTAGGAGGAGGGTGTGGTGGGGGCCAGGTTGCCCCAGGTGCCTCCTGGCTCCCCAGCTGGGGGCCAGCAATTAGGAAGGAGAACCACCTGCATTGACGGTCATTTACCCAATTGTGCTTTGTGGGATATTCAACCCAAGGAATGTGGCACACCTGGCTGAGCGTAAGAGGAAGCCCAAGTTCTCCAAGGAGGAGCTGGACATTCTTGTCACAGAGGTGACCCACCATGAAGCAGTGCTCTTTGGGAGGGAGACCATGCGGCTGTCCCATGCTGACAGGGACAAGATTTGGGAAGGCATAGCCCGGAAAATCACCTCCGTCAGCCAGGTGCCCCGCTCCGTCAAGGACATTAAGCACAGATGGGATGACATGAAACGGAGGACCAAGGACAAGCTGGCCTTCATGCAGCAGTCCCTGTCGGGCCCTGGGGCCGGGGGCCGGGCCCCCACCATCGTGCTCACGGCCCACGAGAGGGCCATCAAGTCGGCGCTGCTCACGGCCCGTGCAGGGCGCGGCTTCCCCAGGGCGGAACTGGATGGCACCGACAGCCCTTCGACCAGCTGTGAGTATCACCAGTCCCCCCCGCCACCCAGCCGGCTGCCTGCCCCCCAGCTTACAGTCCACAGTCTCCCACCGACTTTCCCTCTGGTTCTCTCCTGTCCCTCTCTGTCCAGCCCACTCTTTCCATCCTCCCCTCCTTCTCCCACTCTTCTCCTCTCCATCCCTTTTTGCATTCATTCTCGAATATTTACTGAGCATCTCCGTGCCAGAGCCGTGCTAGGAGCTGGGAAGACAGCTGTGTGTAAACCCCACGCAGGCCCTGCTCTTGGGGAGACCCTGGACTCCTAGGAATAAACCAACGTTAAATAATTGCACGAGTAAACTGGAAACGAAGGGATGGAGGACACAGGAGTCCAGGAGGTCCCGAGAGCAGGGCTGACTTCATGAGCATGCAACCTGAACAGTCACAGGGGCCGCGGGGTTTCAGGCTCTGCTGTCGCCATCTGGACATTCTTCATAGTTTTTGAGCCAGGGGCCCCACGTTTTCATTTTGCATTTGACCCTGCAGGTTATGTAGCAGCTCTGTCTGAGAGTTAAGGAGTGGGTAAAACTGGCTCCACTGGGGACTGGGGAGGGCTCCCTGAAGAAGTCCAGCGGACTAGGATGTGAAGAGTAAGAGTTAACCAGGCCAGGCAGCAGCGTGGGGCGCGGAGAAGGGGAGGGGAGGCGCGCAGGCAGAGAACAGCATGTACGAGGCCCCGCATCAGGAAGGCGCTTGGCACGTTCCAGGAACAGTGAGAAGCCAGGAAAGCCCAAGTGTAGCAGCGCGGGGGAGGGGGCTGGAGACGAGGCGGCCAAGCTGTGAAGGCCCGGGCCGGGCCATGGAAAGATCAGTTCCTTTCTGTGTCTGGTCCTGACTGCTTTGTTCCTCTATTATTACTCCCCTGCCTGAGCCACGCTGCCTGCCCCCACTTTTCTGTGTGCTGCCTCTCAGCTCCCTCTCCATCCTCCTGGCTGCTCCGCCACCCGCTCCCCACCCCTCTTCTCCCTCTGTACTTGTCCCTGCCTTTCCTCTCTACTTCCTGTGTCTCACATGCACTTTGAAGCCAGGGCCCCAGCGGCCGAGGCGGGTGTCCCTTGGGGCTGGAGTTCTAGTTGGGGCTCAGCAGAAGGGGGAGCACTAAAGGCCTCCGCAGGGACTGCAACCCTTCCTTTCCACTTCTGCACATCTCCCCCGTGCCCCGCCAGCTGCAGTCCCCACTAGAGGCCGTCTGCCTGACCGGCTCGTGAGTGGTGGGAGCCAGGCAGGAGGGGCCCCAGGGAAGCAGCCGTGGCTCAGCCCATGGGAAGGTGCTTTGCAAAGACTCACTTGCACCTTCCCTTCCCGGGCCCCCTGCCATTGTGATCCACTTGCTTCCTGTTTGGCTGGGGCTCCTGACAGGTGGCAGTTCACAGAGTCAGATGTTTAGGACTGGAAAAGAACATGGAGACCATTTAGTTCAACTTCCTTGCAATGCAGAAAGTAAGCTCTGAAAACCAAGGTGGCCCTGAGCTCAATTCAGAAGCAGGACTTGAACCCGGGTCTGCTGGCTTCCTGTGAATCAGTGTTTTCCTAAGTCTTAAGAGGATTCCACCCCGTGATAAGAAAAAATGGGGGGGTCAGCATCCAGTAAAGCCTGTTCCCTGCATCCTGCTCCGCTCACCCCTCCATCTCCCTGAGACTGAATGTAATGAGGCCACCAAAGGTAACCTGGGCTGGCAGGGAGCCCGAGTGTGCCATCAGGCAGAGCCCGCTCACCCCCATGGCAGGCTCACAGCCCTCCTTTTCCTGGCAGTGGCCAGCTGCGGCAGCACTCGGCCAGGGGCTTGGCAGAACGGGGACCTGGGAGGGAAGGAGCAGCATCACCTCGCCGGGTCTCACTCCTTCCAACACTGGCCATGCTAGACAGGTCTCTGGGATCTCAGGGGATGGCTGCTGTCCCACCAAACACTGCCAAGAGACACAGGACTCTTACCAAGCTGGCCCAAGTGAGCCCCCAGGACCCCTGGGAGGCATGAGGTAACTGTAAGATAAACCTGTCTGTCCTCCCCATCACCTTCCTGGGGGGTGGTTCTGAGTTGAGTCCGCAGATCCAGGCAGGGAGGGCTTGCCTGTCAGTAGGGTCAGCCCATACATCATTTAATCCTGCCACAGGGATCAGCCCATACCCTTGGTCACCAGAAAGCAGGACCCACATGTGCAGAGGCTGGGCCCCCTCCCTGTGTCCGGCTGCAAGGAGCAGTCTGTCCGATGGCCCCTGTGGATGGGAGCACGATGTGACTGAACTGGAAGCCTGCCTTGGGGGACAGGGGGACAGCAGGGCTGGTTGCAGAGGTGGCTCTCCTGCTCTGCACTGTCCTGCCAGTTTCTTCAGCCTGTCAGCATGTGCTGCAGTGATTTAAAGATGCAGATTCCATATTAGTAGTCTTTTATCCCTCACCCCCTTCCCACTCTTCCCCCCAAGTCCGCAAAGTCCGTTGTATCAATCTTATGCCTTTGTGTCATATGGCACAGTGTATACTGCTTGGGTCATGGGTGCACCAAAATCTCACAAGTCACCACTGAAGAACTTCCTCATGTAACCAAACACCACCTGTACCCCAATAACTTATGGAAAAAAAAGTGTGCAGATTCCAGCAAGGCCACAGGATGGCCCCAAGCAATGCAGACGTGGCCTCAGAAAGTCTGGTGCTCAGAGGGCCAAGAGCGTCTTAGTACCTTTAGGCAGGTGCCGCTCCTTCAGCGTTACAGAGCACCTTCATGTTTGTCATCTTGTTTATGACTCTTCTTAACAACCCAATTAGGTAGCCAAGCGGTTCGATGTGTAGACAGGGCAGTCGTTATCATTGCAGAAAGTGAGGTGCAGAGAGATGAACTGACTGCTGAGGTCAGGAGCTGCTGGGTTGGCACGCAGCCGGTGGGCCACGGTCTCCAAGTCCCCTGGCCTGGGCTCTTCCCCACTAGAATAGAGCTGTTCCGTTGAGAGGAAGAGGAACTTCCCCCCAGGGATGCTGGGCCCACGCACCTCAGGGATTTGGGGAACGTGGATTTCTCTATGGGCGGGGGCCAAACTAGACCGCAGGGTGGCAGGGCAGGGGGATACTCAGGTGTTTTTCAGGGGCAGGGCCAACCCCTGGGCCTCCCTCCTTCTCCCTTTTGTAACCACTTTTCCATCTTTGTTTCTGTCCCCCAAGATGATGAAGATGAGGAGGCGCCTGGGCCCTCAAGGCAGCCTCTTCGGGTGCCTCTGCAGCGGTCTCCGGAGGAAGAGGCCCACCTGGCCAGGCCCGCCCTGCTCCGTTCATCCTCCTCCTCAGACCAGTCTGAGACGGTGGGCCCCAAGCCAGAGGCCCTGCCCCATCCCTCGCCCCAGGCCCAGGCTGCCTGCAGGACCCCTCGGCCGCACCCCAGCCCACCCACCACGGGCCTTGACTGGCAGCTCCTCCACGTCCATGCCCAGCAGACCGAGGTGTTCCGGCAGTTCTGCCAGGAGCTGGTGACCGTGCACCGGGACATGGCCAACAGCATGCACGTCATCGGCCAGGCCATGGCCGAGCTGACCAGCCGTGTCGGTCAGATGTGCCAGACGCTGACAGAGATCCGGGATGGGGTTCAGGCATCTCAGCGGGGGCCAGAAGGGGCAGACCCTACGGGCTCCACTCCCCAGGCCACCCAGGCCCAAGCCCCCCTGCCAGAGCCCCCACCAGCTTCCCCAGCATCAGCCCCCACACGGACTACCAGGTCTCGGAAGAGAAAGCACAATTTCTAACCCAGCTAGTCTGCACTAGGAGGAAGAGTCATGGAGGAGGGATGTCTGGCCTCACAACAGGGGCCAGTCTTTCGTGTCCAGGAACAGGATCGATGACCCTTGTAGGACACTGGGGGCGCTGTTACCTCCTCACCGAGCGCAGGTCGCTGCCCTGTGGTCTAACAGAGCATGTATTCAGACCCGCACCCTCATCTTTGGCGGATGCTGAAGATGCAAGAAAAGCCACCTGCTTGATGCTTGCTTGGCCTGGAGATCGTTCTCCTCTTGGTCTGTGTCCCGTGGTGGCAGGCCTTGCAGGGAGGGGGGCGCAACAGTGGGGAGCATCCGAATGGAGTCCCACTTTCCAACCTTGGGGCTGCTGCATCGGCCTCCCACATGTGACCTCCCAGGCCCTGATGCTGCTTCTTTTGAAGGGGGTGAGGCCTGATGGGCAGGTCAAGTCGGTCCTTCAGGGAGGGGTCTACCCTCCCTTGCCCGGGGGTGGTGCCCGCCTTGGCCCTCCGCTTGCCCTTGTGCGCGTGCTCAGCTGCTGTGCTTGCCTTTTTTGGAGTGGGGAGAAGAATGGGATGACGTCGGAGGAAGGAAAAGACTGTCTTGCATTCATAGAGAGCACTTTATGCTTTTCCTCGCCCTTGCAGAGTCTGGGTGGTCTCAGTGGGGGCTCAGGACAGTCAGCTCAAGACAGCCAAGTCAGGTATTATTATGATCATTTTTATCATCATCATCTGTATAAGACAAATGACACAGCCAGTTAGTGAGAGGGCCAGGACTGGAAGCCAGGGTATCGGTTTTCCCAGCTCCCCTGTCAGAGGCCAGATCTGGAGTAGTGGGAAGAGGAGGCAGGGGGCAGGTCTTGCCCCTTGCCAGGCCTCTGCCCCTTGCCAGGCCTCTGCCCCCTGTATCTCTGCTTCTGCCTCAGCTGTCCTGGGTGAGGTGGGAGGCACCTAGCATTTAGCAGGTGATTCTCCCACCCTGCCCTGGCTCTATGGCTCATAGCCAGTGGCTTGGAGAGGCAGGGCCAGATCTCAGGAGTGGAGGGCAACCTCTTCCCTGGCTTCTAAAAGAATCCAGAGCCCAGTGGGGCTCATGTCCCATTCCAGGTTCCAGCATGCCTTGCCTCTGCTTGCTCGGGCTGCCTACGCACTAGCTACATACACCTCTAGCTTCATGTTTCATGTTGGAGTGTGGGGAGAAAACTGGGTTCTTAGCATTAGAGAGGGAAGTGGCAGGTGGCAGATACAAGCTTAGCTCTGACCTGGGTGCACCTCAGCTCTGTGTCCTTTTTTTTCCCTGACCTGAAGCTGACCCCAGCAGAAGTCCCCCAGCCAACCCCTCCACCCAACAACCCCCCACCCTCCCATCCTGCCCCCAGCCATAGTGGGAGCTGGGAGGATTGCAGCATCTAGTGCCTTCCAAGGCTGTTCCTGGAGCGCTGCTTGTAAACCCAAGCCAAGCTTTGTCCCACGTAGGGAGAATGGAAGGTGACTGCAATGTCCCTGTGCCTTTGGCTCCATCTCCCCATTCTGTGGTTCTTTGGGGGTTCCTGCTTCCCTCAAACTGAACACTCTCCTGTCCAACAGCCTGATGGCTTAATTATTGCCTGGAATTGCCCGGCCTCCGATGCTGGAATCAAAGATTGCCTTCCGAAGTATTTTTGTTAAGATGGCAATAAAAAGAAATCAATCTCACTCTTTGAACACACCCAGTGTCCAGGATCTTTCTTTGGTGTGTATTCTCTTTCTTCGTTTCCTGTGAAAACCTCGAGGACCCCAAAGCAGGGGTTAGATGTTTAAGGAAAAGCAGGTTGGTGAGAAGGGCTCAAGTGCCCCTTGATTTCCCTGATTCTATAAACTGCCAGATTCCCTGTATCCAGCACCATGCCAGGCCCTCGGAGGAAAGGAAGGGCATGCATGCACGAAACCACTCAGTTATATTTCATTTCTCTGCTCAAAAGTGAGGTGTTGCTAAGTCAATTTTACCTTTTGTTCCCTAAAAGTAAGCGAGAAGTTCTGGAAAAACAATCACCGTTTCGGACAGGAGGCTTTAGAAGGGTCAGGGGCTGTCCATGTGCCAGTGCACTTTAGGGGCCACCTGGAGGCATGACCCTCCCCACCAATCCAGGTGTCTGTGTGTCTGGCACTGGCAAGGCTCTGCCCACCTAGATCTGAGGCTTCTCAAAGTAACCAAAGCTGCCTCCTCTGCCAAGAGGAAGCCTCCTCACCTGTGCATTGCCCTGGCTTAATACCAGTCTCAGAGAGCTTCTCTCAGGCAGGAAATCCCCTAGTCTTGCCCACAGATCCCCTTTCTAGAAGGTTCTAACTTGCCATCCTCCACAGTTCTTGGCCAAAAAGCATGGCCATAGAAATGGAGGACTACCCAATTTCCGAGAGATGCAAAGATGTCGTGAAACCATTCCCAGGGCCTTCTCTCCCAAGGTCAATGTATGAAGCAGTGACTGGCTGGCTGCTCTCTCTCTTCCTGGGGAGGGAAGGAGCCAAATTGGAAGCTGTAAAACTGAAATGGAAGTCAGAGCAAAAGGGACAGTGAGGACTTGTCAACTTGGGATGGAAAAGATTTTCAGTTTCTGTTTCTTGGCTTCAGTGGGGATTGTTGGGCTAGCACATTAAAACAGGAAGAGGAAACTTGGGTGAGAGACAGAAATGAATTGGAAGAGGGAGGCCTCTAGCCATGACCAGGTGACCATCTGGTGGGTGGATGTGTGACCCAAAGCCCCTCCTAGCCCGGAGACCTATGCATGTGAGAACACAGAGCCCAGCCTCTTCTCAGTCGGTCTTTTCCTAGTTCTGCCTCCTTAACTGGGGCAGCTTCCTTTGTATTGAAGATACCCACTATGCAATAGTGTCTGAGCCTGGCCTAGTCAATTCCCTCCAGCAAAATGGATGCCCTGTGTTATGTTTTCTTTGCGTTAGAAACAATAGTCATGTGCTGACCCAGCTAGAAAATATGATGCACTTGATAAGACACAGTGGGTGAGGTCTGAGAATTGTTGTCTTAGTACTTACCTATCCAGTCCCCAAGGTCAGCTGGGAGGTTGGAATAAAAACAATCCAGGATCATCATGACAGGTTTAGTCCAGAGCTCTCCACCGCCATCAGCAGCACCACCACCTTCCCCTTGATTGCTCCAAAGGTCCCAAATTCTGTGGGTTGGAGTTGAAATGCCTCAATAAGCACTAGCATTTGCAGAACAGTCTCAGCCAGGCATTCTCTGTGCCTTCTCTCAAGAGGTAGTGACCTGGTAACTCTTCAAACCTCCTTGCAAAGAGCTGCTCAGCCACAGTGGATAGATTTTGCCCCTCCTGGTAGCCTTCCACTCCTTGGGGAGGGCTTCTGATTTCTGCAGCCATGTAATGAATGGAACAGGCACAGTTCTTCATAAAGGGGTTGTTGTGAATGGGGACAGAAGGGTTCTGGGGGGTGGTCGAGCCAGCAGGTGTTAAGGCAAAACACTTAAAAGCAGGAGATCTAATCAGAGGTAACAGGTCTGGGGACCTAGCTGGCTTCATTTAGCTTTACCTCTTAAATGGTATAACATAAACATCTTGTCAGGGGAATGGGTTGTGATTCACCAAGAGTTGCCATATACATTGTATTTCAAATGCTAAGTTTCAGAACAACAAATACAACAAAATCTGAATAAGCATTGATCTGCCTTTGAAAATACTTTGTGATTTATACAACGCCTTGAGGTTAGCTTTCCAAATATTGATTCTTGATGGATAGAAAAAGACCAGAAGATGGAAAGTTAAATTGACTTGAGTCTTTCTAAACCTTTTGACACACCCTAGAAGTTGCTCTTTTGAATAAATAAATCCCAGATAGGAATGTATTTCTCATCTAGCTTTTTCTCTTGATGTCAAGTGTCAGAGAAATAATTCTAGCTTTTAGAGGTTGGTGGTTGTTTAGAAACTGGAAGAAAAAAAGGAGAAGACAGTATTCTCCAATCATAGTGCTATGATTCAAGTGAGTCTTGTGAGAAAAAAGACGAATGAATGGTTTCCCTTTTGTATCTGGGAGCAGGAAAGTTTGGAACAACTTCTATTCTGTGCTAACCGCAAGGTTGATTATTTTTGGATGTCAAATCCTAGACTCTCACTAAATTGGGGACTGGAAATATTTTGCATATTCAGAAGAAATCTCAGCTATGGAGAAAAGACTGACTCACAGTTGTAGAATTGAGATTGGGAATTATTAATTTGGAGTGACTTCTCTCACTCCAAATTAAAGGAAAAGGGGCTCTTTTCCTTTCTCTTAAGTCCTTTGTTAATAACATCCTGGCTGGGTGCGTGGAAATCACCCTGTGGTCTTCACTACTCAGGGATAGCGATGCTTATATCCGATGTGATAAGAACACCGATGTGTTGGGGCTAACAGAGAACACAGACCTAGGACAAGATGCAAATTCTGGCGGATCTAAGCACCGTAAATCTTGCAAGTTCTACACCTCCATGGTGGAGCCTGTGGCTTGCTTCTCTCAAAAGGTTGAAGCAGCCAAAGCCAGCATTTGCTCTCCCATCTGCCTTGGTCTTACTCCTTCTGAGGTCTTGCAGCATCCTGTTGCCAGAATGGATTGTTCCCTGGACTCCAGTGATCCTCCTTGGAAGGCAACAGCCTCCTCCCAGGCTCTCCAGATGAGCAAGGCAGGATATAGATGAGGGGCAGCTGGTGCCATCCCTGGGACCTCTAGAATGTAGATTCTCCATGCTGCTAGCTGCCACCACTGTCACCTCATACTGGAATTGGCATTCGTATATTTCTTTTCTTTATATGTGTGTCAGGAGTGAGGTGCGTGACAGTAATAGTTGCTTATTGAGGGAAACTTTGAAAGTATGCAAAATTACAAAGATGATCCACCTGTAAGGGGTTGTCACTGTTAAAACATTGGTATATTTCCTTCAAGTCGTTTACTGGGGCTTGTTTTTAAAGCATTATTGGAACCATAGTCTACTTCCAGTCCTATTGTTCTCACACTATCTTATTTCAACACCATTTTTCCATGTCATAAAAGATTCTTTGAAAACATTTTTCTATAGATGAATAGCATTCCATTATATAAATGTAACATCATTTACGAAATCTTATCTAGTATTAGACATTTAAATGTTTTGCCTTTGTACTGCTATACACAATGATACAAGTCAGCATATTGGTATGCCGGGTTTGCATACTTCATCCATAACTTATGTTTCTTGAGCCATATTGCCAAATTGTTTCCTAAAGGGTTGCACCTGTTAATTCTGCATCATCAGTACAGGAGACACCTTTCTTACCACCTTTACCAATAGAGATATTATCATCTTTTAGAAATCTGTGCCAATGAGACAATGTACTACGCTGTGTTTCTGTTATTAGTGATGCTGAATACTTTTCATTTGTTTATTATCCATCTGAATTCTTCTGTGAATTTTTGTTTCCCCTGGACTTTTCCAGATATAATTCATTGGGCTACACCAATCAGACAGACTTTGATTTTTGTCCCTTGTTTTTGAGACAAACCATAACATAAAGAAGTTTATTTTTTACTACAAATTTCCTAGGTGCTTGTGTAGCTCAGAACCCTAAAACGTCAACTAATTTCCTCTTGCCCTCTGATCTGTACACCTTCACTCCTCGGCAGGTGTTCCCTCATCCCACCTTTTGGAGGTGGGTAGGGTGGTGGGCTGGATGTCGCACATGTTGTTTCAGTGAGAATGGGCGAGGGCCATAGATTCTGAGGGTTTGACAGAACTTTAAAGGTTTTCTGGGCATTGCCGAGTTGGTGCTTTACATGCCCACATAGGAGCCATGAGTTACAGTGGGAAACGTGCATAGGACTCAAAGCTCCATCTCCCATTTATTAGCTGTGTGACTTTGGGCAAGTTGCTTGGCCTCTCTGAGCCTCAGTCTCCTTACCTTAAAATCATTTAGTAAGATTAACCAGTGGTTGTCAACCTTTTGTAGTCTGTTATTTACCTTCCTCCCCTGTCCCCACTGGAGCCCCCATTTTTTAAAAGATTTTGATCTTTAGCATTTATTAATTGATCTCTTGGACACCTTGTCACAGGGGCTATTTCAGCAAGGCTTTGTGAAATACTGGAAACAGTTGAAGGACCCCAGCCTTACCACCTTCAGAGGCCTGTGGGTATCTGGGAACCCCAGTGGTTAAAAGTTAGTGAAGAGTAGAAGAGATAACCTTTCAGTTTTTCAATCACTTATAATATTTAGTTGATATATTTTCCATATGGTGTGAGGCAGGCAGGGCAGGTGTCATATCCAGTCTCAGAAAACAGAGATTCTTAGAGGTTTGGAGATCTGCTTGAGGTCCCACAACACGGTGACGTTGGGACAGGGATGGGTTCTGGCTGGTGCTGCTTCTCCGGACAGGGCAGCTGCTCTGCTGATGTTCACATGGGCCCACGTGCCTGTGGACTTCTAACCATCCACACTTGCCCAGCACTGTGCCGGCACCAGCGGGCACTCAACAAAGGGTGGCCCGTGCGTTCTCACCTGTCTCCCCTCCCCACCAG
Seq C2 exon
GTACGTGGTCATCTCCCGGGAGGAGAGGGAGCAGAACCTGCTGGCGTTCCAGCACAGTGAGCGCATCTACTTCCGGGCGTGCAGGGACATCCGGCCTGGGGAGTGGCTGCGGGTCTGGTACAGCGAGGACTACATGAAGCGCCTGCACAGCATGTCCCAGGAAACCATTCACCGCAACCTGGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019485-PRDM11:NM_020229:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(22.9=100)
A:
NA
C2:
PF0085623=SET=PD(42.7=64.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)