MmuINT0125807 @ mm9
Intron Retention
Gene
ENSMUSG00000075028 | Prdm11
Description
PR domain containing 11 [Source:MGI Symbol;Acc:MGI:2685553]
Coordinates
chr2:92820668-92833588:-
Coord C1 exon
chr2:92833521-92833588
Coord A exon
chr2:92820856-92833520
Coord C2 exon
chr2:92820668-92820855
Length
12665 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ACCTGTCCCCTCCCCACCAGGTA
3' ss Score
10.66
Exon sequences
Seq C1 exon
ATTGTGGACAAGAACAACCGCTACAAGTCCATAGATGGGTCGGATGAGACCAAGGCCAACTGGATGAG
Seq A exon
GTGAGTCCCATCCCTGCCAGCTCCAGTGAGCCTCACCAGCCTCTGGGCTGGGCCCAGGAAGTATCTTGGGCCTCCAGGATCTCAGAGCTCTCCAGGCTGCTCCAGAACTGCAGCTGACAGGGTTTGAAAGAAGTGTTCTGTTCCCCAGGCTTCCATCAGAGGCTCTAAAGAGCCTGTGGCCAGACCAGCAGGCTGCAGGGATCGGGCTGCATGCCATGACTCCCAGTAGAATCCTGCAAAGAGGAAAATGTCCCCAACCTAGGTTGGACCACTAACATTTATCCTAGGGCAGATTCTTGTTGTCTGGATGACATCATTCCAGGGAAGACCCAGAAGTCATCCTATGGTTTTATGGGAATGAAGGTTTCTAACATCTCCAGCTCCCTTCCCTATGGGGCTCACATTAAACTTGACTGCTGACCAGCATGGGTCTACCCTGGCCAAGGCTGTGGCCTAGGACTGTGTGTCAGAAGCATCCTTAAAGTCTAGCCAGAGAGAGCAGAGAATTGAACAAGGGTCACTTCCCAGGTGGCCACAATGAGTTGGCATCCATGCTCAGAGCTGGCCTGTGTGGTATGTGTGGGTCCTACCAGTGGGTGTGTATTAGGAAAAAAGTCAGTTTAACTCCAGTACCACTTGGTGGCCTGGATCCATGGGCAACGATGGAGCATTTAGATTTGTTTAGAAGAAAGGAAGACCTTTGAGGACCAGAGACCCAGCTACATCATGAATCGAGGCCCTATCATGTATAGTTCTGTTCATCTCAGATAGCAGATGGGTGACCTTTGGGAACCAATGGGTAGGTGAGAGATGGGGGCAGCAAGAGATGCCTCAGGATGTCTGAGCACATGAAGAGGACCTGGTTGGAAGTGGAAAGTCATGAGGAGGTCCCCTGTGTCCTTCTCCGTGGCTTCACTGACACCTGTATGACCTCAGGGCTGCGGCTGGTTTGCAGGACAGTTGGGCTCATCCTCTTATTGAGAGTGCAGCTGTTTCCACTGCGGCAGGCAGGTGCAGAATCAGCGCCCACATGTGGCCTCCTCCTCTACAAGATGGTCTGCTATCCTAAAAGTGGCACCAGAAGTTGTACTTGACGCTCCTAGCTGCCGTCTTCTCTCTCTGCCCTGAGGTCCAGGTCAGCTTGGCAGTGTCTCATCCCTTATGCTGGGCATCTCGTCAACTCAGTCACATTGGAACATATGAGAGTAGGCCAGGTCAGCCCTGCCCTCCTCTGCTCTCTGCACCTCTACAGGCATGCCTGCTATTGCATAAATGCCAGAGAGGCTCAGACATGTGCTGTGTGGGGGTCCAGATGGAATAGGGAGGAGCCTTTGATATGTGCCTTCTGAGGGTCCAGGACTTTGTTGAGGACAGCTGGAGCAAGTGGGCATGAACCTTGCAGAAAGACTGCTGACGGACAGCACAGCCCTGGGCTAGGCCTTCGCATGCGTCACCACAGTCAGGTCCAGGCTTGCTGAAAGAGTGAACCTGATGTATCCTGTGACACTGTTACTTGCAGAGCTCCAGAAGCTATGGCTTAGAGAGCTGGCCTGTCCCATGTGTCCTCCCATTTCTGAGCTTTTGTTTGGTTGGGCAAAGGGTTTTCCCGCTGCCCCCTAGAAAATAGTGCCTCATCTCAACCATCTTGGCCACTGTTTAGCACAGCAGGGCTGCTGGTGTAACTTGGCTGGGGATGGGTCCGGAGCATCACGATTCTGCAAGTTCTTGATGGTGATTCCAATGTGGCCGCTCAGGCTGACAGCCGTTGTGCTGGTGGTCATGCCCCAGTGACAAACTGAGACCCAGAGCAGGGCAAAGTCTTGTTCACATTCATGTCACCTGTGGCAAAATGAGGCCTGGGGTCCTGTGTCTCTAGCTAGACCTGCAAGCCACAGTTCTTTCTGATAATATACAAGGGACCAAGCAGAGCATGGCTCCTTATGACTGTGGGTGGGTTCCGTGGGTGGGAGACTGCTGCTTCCTCCACCTTTGTTAATATGACTCTGTCCTGCTACCCCTAGCCTGTCCTGACCCCAGATGACTCTGGGTGGTCTTGGCTGACGTGTCCTGAGTTAAGAAGGTTCCAGGAGCTGGTGATTGTGTTTGTGTGTGGCTTTGCTTTTGGGAGCTCTTGCTAATTTACAGACTCTTAGTTGTGTTGTCACCCCAGGGCTTTGGGGGTGATGTTGTAGATCGACATCCTTATGAAATTACTGGTGGACCCAGTAAAGAGTAGGTACAAAGGTACTCATGTCTTGAGTGTTAACCTGTGCAAGCTCTGTGTTAGGTGCTCTGCATGCAGTAAGTCTCAGCCTGGGGCATTTGGGACGCATGGGCAGTGCTTTCAGACGTTCTAGGTAAGCACAGCTTCATGCGTGGGTACTCCTGGTTTTGCAGGAGTAAAAGGTAAGTGTATTATTGAACATTCTACACTGTACAGTAATCTCCTCTCCTGACCCAGACTCTGATTTCCCATGGCGGCGTAATTAGGGCCCTATAGGCTTCACTCTAGTCTTATAGAGGCCCTGTGGTCCCCAGGGATAGTCTCAAGTCTGTCTGAGCTCAAGGCCTTTGTCCTGAGCTGGGTATCGAAGCCGCGAGCTTTCCTTTGACTGATTACACGCGCTTGGCTGAAAGGACTCAGAAGTAAGGGTGGAGGAACCGAGAGCTGCTGGGGCTTCTGTGATTCTGGAAGCATCCAGAGGTGTGGGTTGGGATCCGAGTTAGCCTCAACACCCTGCTTCCTCCTGGGTGGAACTCTTGTTTCAAAACTATAGCAAAAGGCAGGTAGAACCGGAATGCTCTTTGAATTCTAAAGCCAGAGCAAGGTCAGGTTGAAGAACCTCAGCAGAATCAGTTATCCTGGTGCCTTTGCTAGGGTAGCATGTCTCTTGGTGGATGCTCACGGGTGCCTCGCATCTTAACTAGAATACCACAGCAGCCACGCCATGAGGAAGGAGCCTGTGGTGGTGCCCCTGAGGGAGAAGAGATTGTTCTTCTCTGAACATATATGTTCAGAAGTAGGGACATGAGAGACACTGGAAGATGGGAGACAAGTCACAGGTGACAGAATAAGCTTTCTGTGGTTGCAACATGATGGACACCAGCAACCAGTGCCACAGCCACTGCAGGCCACTGTAGGCTGTGTTTTAAACTCACTTGATGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAAGATGCCCAAAGAGGCTAGAGAGGGGCAACAGATCCATTGGAGTTTGAATGAAGGGCATTTGTGAATTACCTGATGTGATTTCTGAGATCCAAATTCTAATACTCAGCAGAGAGTTGTAGTAAATGTCCTTAACCCCTGAGCTGCTTCTCCAGTCCCTTAAGTGGTTAAAGCTCGTGTACGTAGATGGAACCCTCAGAAACTGGTCTGGACGGGGAGAACGAGGCAGCAAAAGCTGAGTGAACTTGAACTTCCTGGTGCTCAAGGCTGATGAGAGGTAGGGCAGCCTACCCTGCAGTCACTGGGCTCCTACTACCTCCTTCCTGCCTTCCCTCTGAGGAGGCATCGCTGTAGGAGGAGGGTGTGGTGGGGCCTTGGTGGCCCCAGATGTCCCCTGGCTTCCCAGATGGGGCCAGTGATTAGGAAGGAGGACCATCCTCATTAACGGTCATTTACCCAATTATGCTTTGTGGGATATTCAACCCAAGGAACGTGCTGCCCCTGGCCGAGCGTAAGAGGAAGCCAAAATTCTCCAAGGAGGAGCTGGACATTCTGGTCACAGAGGTGACCCGTCACGAAGCCGTTCTCTTTGGGAGAGAGACCATGCGGCTGTCCCATGCCGACAGGGACAAGATTTGGGAAGGCATAGCTCGGAAAATCACCTCCGTCAGCCAGGTTCCCCGCTCCATCAAGGACATTAAGCACAGGTGGGATGACATGAAGCGCAGGACCAAGGACAAGCTGGCTTTCATGCGGCAGTCACTGTCGGGCCCAGGGATCGGGGGCCACACCTACCCCATCATGCTCGCTGCCCACGAGAGAGCCATCGAGGCAGCACTGCTCACCACCAGGGCCGGGCATGGCTTCCCCAGGGCAGAGCTGGACGGAACCGACAGCCCGTCTACCAGCTGTGAGTATCGATGCCGAGTGTGGGGCTTGCTTCCTCGTGTGCACTTATTCCCATGCTAGCTCTCAGCCCTGCCTGTCTCCCTGACTCTCTCCATGGCCCCATCTCGCTTCTGTCTTGCCTCCACTTCTTGCTCATCCACTGTGTGCCAGAAGCCCGCTTGGGAGCAGGAAGGACAGGGCTGCATCTAAAACCTACACAGACACTTGTCGGACTAAATAAGCCCCAGGTGGATCCATCCTGTGGCCTAAGGGTTACGTGCACATAGCTATGAAGGTGGCCGAACCCAAACCATAACCTTGTTTAAAACAGTACAAGTGTTTTGTTGGTTTGTTTGGTACCTGGAGCAGAAACTGTGGTTGACCTTGTGTTACAGTGTCAAAAGGTTAGACGTGCCTTCTTGGATTAGATTATTGTTCACCTTAGAGGAAGGATAAGGGCTCACCCAGTCCAGGACATCCCAGATTTCCAGCTTTGAGCTTGTGTGATCTCCAGGCCTCCCACCCTGGGCCTGCTGCTCTGCAGTCTGGGCTGGGTCTGGGACACACATGAATGGAGGGCTGCAGCTGTAGAGAAGGCCTGAGGCTGGCTGAGGAAGATGTTTGAAGGGCGAGGAAGAGTTAACCAGGCCTGGTGCGAGGCGCAGAGGAGGGGAGGGGAAGGCGAGCAGGCTGGGAACAGCATGTACAAGGCCCACATCAGGAAGGCGCTTGGCACGTTCCAGGAACTGCAGAAGCCAGGGAAGCCCCATCCTAGCCAGCCGGCAGGGGGAGGGGCACCACCACAGCAGCCGAGTGGCAGGGCTGGGCTGGGCCGGGGAGAGACCTTTCTCCGTGACTCTGTCTGCTTTGTCCACTTCTCTCCCGTCTTCTGAGCTTGATCCACTTCTCTTTGGCTCCTGCTTCTTGGTGCTCACCTGGGACTGGCTGGTCTCCTCCACCCCACCCCCATCCTCCCCATCCCCCCATCCCCCTGCTTTCTTGCTTCCTGGGACTTTTAGCGGTTCTAGCTGTTCTAGCTGTGTTCACCAGGAGGGGGAGCCATCGGAGTCCATCCCTGAAGAACTATCCCCTCCCTCCCACTTCTTCACACACCCATACCCTTCCTCATCTGCTGTCCTCAGTGGAGTCCTGTGAGCAGGGCAGGAGGATCCAAGGAGGCTGTGGGGCCGAGCATTCAGCCAGCGGGAGAGTGGTTCACCAAGTCCGACTTCCTCCCTGGCCCTTTGCCGCGGGGATCTGCTTATTTCCTGTTTGGCTGAGGTCTCTGACAGGTGGCCACTCACAAAGTCAGCCTCGGGAGTAGAAAAGAGTGGTCATGATGAGGGTGACTTCCTTGTTAACCAGATGAGGCAAACAGTCTTCCAGAAAGTGGAGGTGGCCCTGAGACATCAGAACCAGACTTGGGCCTGGACCTGCCAGGGTTTGCTAAAACCTCGGGGCGGGCAGCATCTGGAAAAGCCTATTTCCTGAATCCTGCCCTGTTCACCCCTCCGTCTCCTAGAGATCGAAGATGATGAGATTAGCAGAGGTAACATGGACTGCAGGGGCTCCCAAATCTACTAACTAATCACAAGCTTAGCCTGGCTGGGACCGTAGTGGCCTCAGGGCTTGGGGAAAGGGTAATGGCCGTTCTGAGTGCTCCTTTCTACCCTTTCTGGCATCCCAAGAGGTTGGCTGCCACTTATGGAGTATGCTCAGGAAGCAGTAGGCTCCACTGCGCCAGCATCAGGAGACCCACAGATCAGTGTGGTCAGATCAAGCACTCACGGGTGGGCCATGATGTGCCTGACCTCACAGCCCACATCAGGGGGACAACAAGGCTGGTGGCTCGCCCCACATAATCCTGAGTCCTGCATCAGCCCTTCCCTCTCATCTCCAGCCATTTGGCATCTCCCTGTGGTGGTTTGTTAGGATTCCAGCAAGGCCACAAGGTGGCCCCAAGCAACTTTGAAAAGTCCCTCCCTTGTGGAGACCAGTGCTCACAAGAGAGCAGCTTAGAACCTCTCACAGGGATGGGTAGCTCTCTCAGCTCTGCAATACACCGTAGGGTCTGGGAGCCCCACTAAGAGCCCAGCCGGGGCCCCGGGGGTTCAGCAGAGCAGTCATTATTGTTTCTCTGAAGGTAGTGAAATGTAATGGCACAATCGTGGTCATGAGCCCTTAGGCTGGCATGGCTGCCACTGGAGCTGGGGTCTCCTTTGCTGGACAATCCTTTCCTGGAATGTAGCTGCCTCTGTGGGAAGAAGGGAACCAGCTCCCGCTCACCCTTCTACCGATGCTGGACCTACACGTCCCAGGGACTTAGAAGCTGGCATTTCTCTGTGTGTGGTGCCAGTGTAGGCTGACGGGTGGCCAGCAGGGACTTTTCAAAGCTGTGACCTGTGACCTGGGCTGCCCCCTCCACCCTTTTGTAATCACCTGTCCTTCTCTCCTTGTCTGATCCAAGATGATGAAGACGAGGAAGCTCCCGGGCCCTCACAGCAGCCTCTCCGGATGCCCCTGCTGCGTCCTCCAGAGGAAGAGGCCCCCCTGGCCAGGCCCACGCTGCTCTATTCATCTTCCTCAGACCCATCCAAGATGTTGGACCCTAAGCCAGAGGTCCTGCCCCATCCCTCACTCCAGGCCCGCAGGACCCCAGAACCACATCCCAGCTCGCCTACCCTGGGCCTGGACTGGCATCTCCTGCATGCCCATGCCCATCAGACTGAAATGTTCCAGAAGTTCTGCCAGGAGCTGATGACTGTGCACCGAGACATGGCCGGCAGCATGCATGTCATCAGCCAGGCCATGGCTGAGCTGAACAGCCGTGTTGGTCAGATGTGTGAGACGCTTATGGAGATCCGAGATGCAGTTCAGGCATCTCAGCGTGGGCCAGAAGGGGCAGCCCCCATGGACCACACTTTCCAGTCTCAGGCACCCCTGCTGGGCCCTACACCAGCACCCCCAGAACCAGCCCCAATACGGACTACCAGGTCTCGGAAGAGAAAGCACAATTTCTAACCTGGCCAGTTTGCCTAAGGAGAAGCAATGCCGGTGGTGTCTGGCCTTGAGTTGGGGGAGTCTCTTGTGTCCAGAAACAAGACTGATGACCGTGGGGCACAGTCGTCTCTTCACCTGGTGCAGTCCAGTCTCCTGTGCTTTCACCGAGCGGGTGTACAGGCGCACCACCCCCTTATCTCAGGAAGATACTCAAGACACAAGAAAAGCTGCCTGCTTGAATGCTTGCTTGGCCTAGAAGGCTGCTCTCCTCGTGGCCTGTATCCTGTATCCTATGGAGCAGGCCTTGCTGGGGCAGGGGGCAGCATCCAACAGAATCTTGCTTTCAACTCAGGGCTGCTGCAGAGCTGACCTCCCAGGTCCTGATTCTGCCCTTTCTCAGGTGGTGCGGGGCTGTGGGTGGGCGGGGCTGGCTCAGCTGGGTGGGTGGGGCCCGGCCATGGCCCTGTGCTTGCCCTGCGTTGCTCGGCTGCTGTGCTTGCCTTTGGGAGGGGTTGGTGGGGGGAGAAGAATGGGATGTGCTGGTGAGGGGAAAGAGATGATTTTGCATTCTTAGCATACTATAAACTTTTCCCCCCCCCCCCCGAGCCTGCACATGGCAGGCCATCTCAGGAAGCCAAGTCAGTCTTTACAATCACTGATTACTGGTCATTCCAGTCATTGTCATACATCTCAGGGTTCAGAAATGACACAGCCATGATAGTGGGGACCTGGCCTGCTTTCTTCAAGAGGCCAGATCTGGAGTACTAATAATAGATGAGGATCCTGCTCCTCACCTAAGCTCTGCCTCAGCTTCTACAGTTAGAAGAGGGAACAAAACCAGCGTGGAGATGAGTATGCCAGCCTGTGATGGCCTTGAGTCTCACAGCCAATGAAGGGGAGGTTCTGGGCCCTGGCCTCAGGAGCCAGCAGGCAGACTGTCCGCTCACTGGCTCCTAATAAGGCCAGAAACCAATGAGACTGTGTCCTGTCCAGCTCCCAGCATGCCTTGCCTCTGCTTGCTTGGGCTGTATACTCACCTAGCCATACAGACTTGTAGCTTTGAGTTTTGTTTAGGGGGCCCAGTCAGAGAGCTGGGATCTTTGAGTGAGGGAGGAGAAAAGAAGCCAAAGGCTTCACTCTGACCTAGGTGCAGCTTTGACCTCGATCCCTGGCCTGAGGCTGACCCCAGCAGACCTTTCACACCCTACCCTTTCTCCCTAAGAAACAGAGTGGACCTGGAAGCCTACTGGACCCAGTGCTCACTGAGGCTGTTGCTAGCGCTGTTTATAAACACACACCATGCTTCGTCCTACATGAGATGATGGACGGATGGCACCTGCTGTGCCCCTGAGCCCTGGGCTCCATTGCCTCAATCTGTGGTTCTTTGGTGGTTCCTGCCCCATCCATCAGACTGCATATTGTCTTGTCTAGTAATAGCCTGGTGCCTGGAATTGCCCCGCCTGTCCATGCTGGAACCCAAGTTGGCCTTCTCAAATATTTTTTGTTAAGATGGCAATAAAATGAATCAGATGTCACACTTTGAACACAGCCAGGCTCCAGGATCTTTTTTTGGTGTGTATTCTCTTTCTTCCTATCCCAGGGAACCCCCATGAGCCTCCAAATCAGGGATTAGATGCCTAATGGAAAGTGTATGGGGAAGAGGTCCCTGTGGACCTTGCATATTCTGGATTCCATAAACTCCCTAGGGGCGTGCTCAACCCCATGCTTGGCCCTCCAAACGAAAGGCAGTGACTTGTAGGCCAAAGGCAGCTGAACATCCATGGATGTCAACTTTTAATTTTTCCTGCACATCAAAAGTAAATTTAACCTTATGCTCCCCCAAAGTATTACAGTTTCCAGGGAAGGAAATAGTTTCTGGCTGGAGACTTGAGAGGCTCCTGGCTGTCCATTAGGGGTTATCCTGGGATACTCCTCAGTAGTGGCTACATCTCCACTGACCTCAGTAGCTGCCTGTGAAAGGCAAGGCCCTGCCTACCAAGACTCCTCAGAAGAACCAGAGTTCTTCCTCTTGGATTCACTGGAGTGTGCCTCACCACAGAGCTGTGTTCTGACCCGTCAGCCTGGCTAACCTCCTGTCATGGAGAGAGCTTCCGTGAGAGGAATCCTCAAATGGTAGCCTATGATGTACTTTCTGAATAGTTCTTAGCTACCTTTGGCTTTGGAATCCAGATCATTCTCTTAAGTTCCTGACCAAAATGCATAACCATGGAAATTAAGATTGCAGTTGGCAGGAGATACAGAGATGCAGCTGGCCTGGGTCTCCTCTAATACCCAAGACCTGTGAGACTGGTTGGCCTCTATTTCTGGTGTTGGGGAAGAAGAGGCCACATTAAAGGCTGTGTACAAGAACCAAGGTCAGAGTCCAGGGACAGTGGTCAGTTTGAGATGGAAATGGTTTCCATTTTGGTGTCTTGGTGGCAGTGGGGACCAGGAAGCCAGAATATATTCAATATATTCAATAGGAAGAGGAAATGAATGGGGAGCCTGTCCCAGCTCTTCCCAAAAGGAAGCCTTGAAAGGAAGCCCATAGCATATGTGGGCAACTGCCTGGATATCAGAGACCTAACCCGGTGACATCACAGAGCCCAGCTTCTTGTCCAGTCTTCCCATTTCTGTCTTCCTGGGCAACTTCCTTTCTGGTAGAAAGCTGCGTTGGCCATGACAGGCTTGTGTCAGTCCCATTAAACAAAGTGGACGACTCCCTGAGCCATTTTCTTTCTTGAGTCGGAACCCATAGTCATTTCCTGACCCAGCTAGAAAATATGGTGCACTTGATAAGACCCAGTGGGTGAGGCCTGAGAATTGTCTCCCGGTGCTTATCTGTCCAGTACCCAAGGCTAGTGAGGAGACAGGACTCAAAACAATGTGTTATCTTCTGGGAAGATTCAGTCCAGAACCCCTGCCCTTCCCACCACTGTCAGTCACCTACTTATTTCTAGGATGCCTGACTCTGAACTGCCAGACTTGAACTCAGTCTCTACAGGACAGCCTGGACCCGGGTGTTTCCCACCCTGCTCTGTTTTCCCAACAAGGGAGTGTGAGCTAGGAATTCAGACCCCCTGGTAGACAACTGGTCTTGACCACAAGGAGGAGACAGTTCCTGGAAACCCTGGGGTCCTTGGCCACGTGACACAGGACAGTATTTCGTAAGAATGAGCACAGCAGAATTCCGAGAATGTGCCAAGCCACTGAGTGTCGCCACTGTAAAGGGAGGGGACCTCATTAGAGGTGATGGGTCCTGAGTCTTAGCTGGATGCAGTAAACTTTCTCTTGAAAGTTCTGTCACATAAACATGTTAAGTCCTGGGACTCGGTGACTGTGATTCACCCACAGTTGCCATCTGTATCTCATTTCAAAAGCCAAGTTTTAAAACAACCAAATGCAAGATGCTCAACACATTTTGATCTGATGCTGGAAATACTTTGTGATCTGTATCAAGACTGAGTGAGAGTGCTCTCTCTAAATGCTGGCTCTTGTTAGGTAGAACCACATTGCAGGGGGAGGGGGGACGAAGGGAAATGCCTGCAAACCATTTGAAATGGTTAGACCCACTCCAGACATTGCTGTTTTGAATCAGCAAATCGTGATAGTGACTTGTTCCCCATGTACCCTTTTCTCTGGCATTTAATATTGAATGGCTGGCCAGAAACTGAAAGGGAGAAGGGAGAAGGTGCTCTTGGGTGTTCTGTGAACCAGTGGTTCCCCAGAGAACACAAGAATGGGATTTCTACCTTCCAGATGTGTCTGGAACAGAAAAACTTGGAGCTACATTCATTCTGGGTCCTCCTGACCATTACACTGGATGGTTTGGGACCAATCCTAGACTCTTGTTAAATTGGAAACTTGGAGCTGAGGCTGGTCCTGTGAGTGGAGCAATAAGGCTGAGCATGGTTGCTGCAGTCTTGGGGTCTGCCTTTTGTCCTTGCTGACTATGTTGTGGCTGGGTGCTTGGAGAGCCTCATGAGATTTTCACAGCTCATGGGGTTAGGGGGCTCTCTGATGCTCATGTAAGATACAGGTGGGGATGCAAGCGTGCTGAGGCTAAGGCCCTGGGCAAGACGGCTGACCCAGGGCTGTGAGCACCATTGATCTTGTCCAGATTGGAGGAGCTTGGTGTTTGCTCTCCCACTGCTTGGGTCTTCATCCCTCAGCTTACAATGTCCTCTGTCGCCAGAATGGATTGTTAACTGGGCTCCAGGGGATGTGTTTCTAAGGTGCCAGCCTCCTCTGGGGTAGTCAAGTTGATTCTTCAGGACCTGTCCAGATAAGAGCAGATGGGATAGGAGGTCTGCAGGCACAGGTCTAGCGGTCTCCAGTGTAAGTTCTTGGAGCTGTCAGCCCCCCATTGTCACCTTGCAAAGAATCTGACATCTGTGTGAATGTTTTCTCTTTGCCTCTTGAGTGAGAGAAGCAGCACAAACATTATTGAGGAAACCTGGAAGGTACAGACAATTCCAGAGACGATCCACCCAAAGTGATGGCCGTCCTGGTTAAAACACGGGTGTGTTGACTTCAAGCAGTTCTGCTGGGAGACACATTGTTAGAGCACAGTATACTTGGCTTTGGCTCCAACCTGTCTCACTCTGCATCACAGCAACACTGTTTTGGAGTTGGGTAAGGTGATTCCAGGATGTTGGAAGTGTCATTTGAAGGAAACTGGGTGAGGGGTGTGGATTCATTGGTGTCTTGGGCATTGCTGAGTCCATGCGTTCCGGGCCCACATGGAAACTGTGAGTTGTAGCTCAGGGAATGATAGGCCACAAATTTGCATCATTAGCTGTGCCTTTGGACAAGTTTCTCAGCCTCTCCAAGCCTTTCTGTTGTTGCCGATCTTCTGCTGTCTCTCCTTTATCTATTCCCCCTTTGTCCTTATTGGGCCAACTATAAGGATGCTGCTCTAAAACTGAGCTATCATCAGTCACTCTTAGAGGATCGGTTATTTCTGCTAAGCCTAGCAAAATATGGAAACAGCCCAAAGCTTCCCCCTGCCCTAACTGAGGTTAAAGGTCAGTGAAAGTGGAGCTGGAGCTTAAGAGCCTGCTCTTTCATAGGACCCAGGTTTGAGTCCCAGCACTCACATGGTAGTTCACAACCATCTGTAACTCCACTTTCAGGAGATCTAATGGCCTCTTCTGGCCTCTGGGAGGGCTCTATCATATGGTACACAGACATAAATGCGGGAAAAACACCCCTACACACAAAATATTAAAATAAAATAAGTTTTTTTTTAAGGTCAATAAAGAGGAGAAGGGATAGCCACCTGCTATTGAGTCTGGGGTTGACTGTGACTCTCAAGGTTGGCAGGGCAGATATAATTTCCAGTCTCAGATTAAACAGGTTCCTAGGGTCCAGAGAATGTGTTAACATGATCCTGAATAGAGATGTAAGTTAGGAGGACCAGCTCTATAGTTGGCTGTCTCTGGATGAGACAGCAGCTCTTCTTATGTGCCCACATACTTTAAGCTCTTGTGCCCTGCACCTAAGGCACTCAACCAGGTGTGGCCCATGGTTCTCACCTGTCCCCTCCCCACCAG
Seq C2 exon
GTACGTGGTCATTTCCCGGGAGGAGAGGGAGCAGAACCTCCTGGCGTTCCAGCACAGCGAGCGCATCTACTTCCGGGCATGCCGAGACATCCGGCCAGGAGAGCGGCTGCGGGTCTGGTACAGCGAGGACTACATGAAGCGCCTGCATAGCATGTCCCAGGAAACCATCCACCGCAACTTAGCCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075028-Prdm11:NM_001177536:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(23.4=100)
A:
NA
C2:
PF0085623=SET=PD(43.6=64.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: