HsaINT0132953 @ hg19
Intron Retention
Gene
ENSG00000005001 | PRSS22
Description
protease, serine, 22 [Source:HGNC Symbol;Acc:14368]
Coordinates
chr16:2906083-2906849:-
Coord C1 exon
chr16:2906823-2906849
Coord A exon
chr16:2906255-2906822
Coord C2 exon
chr16:2906083-2906254
Length
568 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AACTTGACCGTACCCTCCAGTTC
3' ss Score
4.68
Exon sequences
Seq C1 exon
CCATCCTCAATGCGGCCAGGATACCTG
Seq A exon
GTGAGTGGAGCTGGCAGCTCTGACGGGAGGGAGAAGGGAGGAGGCCCACGCGCAGGCAGTGTCTATGTGTCCGTCCCCTGGGCACAGGTCAGAAAGGGGCTGGGGTGAGAGGGGGAAAGAGCTAGAGGGGAAGGGAGGCAGGAAGGAGACACGGATGCAAGGAGAAAGGCTTGAGAGATGCCAGGGCCAGAGGAGAGAGAGAGCCAGGAAGGTGAACAGAGTGGAAAGCAGGGTAAGGAAAGAGGGGGAGGGAGAGACCAGGTGCAGCTGACAAGGAGTGAGTGGAAAGGCCAGGGCCAGGTGAGGACCAGCAGAGAGTGAGGATGGAGGGAGGGATGGGACGGGGAGGTGGGCGGAGCTTGGGGTATGGGTGGAGCTTAGGATGTGGGTGGAGCTTGGGGTGTGGGTGGAGCTTGGAGTGCAAGTGAAACTTGGGATGTGGGTAGAGCTTGGGGACATGAACGGAGCTTGGGCTGTGGGCAAAGCTTGGGGTGCAGGCCTAGGGATTGGGATTCCGGGGGTGGGTTGTAGGAAGTTGGAGATAACAAAACTTGACCGTACCCTCCAG
Seq C2 exon
TTCCCCCAGCCTGTGGGAAGCCCCAGCAGCTGAACCGGGTTGTGGGCGGCGAGGACAGCACTGACAGCGAGTGGCCCTGGATCGTGAGCATCCAGAAGAATGGGACCCACCACTGCGCAGGTTCTCTGCTCACCAGCCGCTGGGTGATCACTGCTGCCCACTGTTTCAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005001-PRSS22:NM_022119:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.6=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTCAATGCGGCCAGGAT
R:
TCCTTGAAACAGTGGGCAGC
Band lengths:
198-766
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)