HsaINT0132953 @ hg38
Intron Retention
Gene
ENSG00000005001 | PRSS22
Description
protease, serine 22 [Source:HGNC Symbol;Acc:HGNC:14368]
Coordinates
chr16:2856082-2856848:-
Coord C1 exon
chr16:2856822-2856848
Coord A exon
chr16:2856254-2856821
Coord C2 exon
chr16:2856082-2856253
Length
568 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AACTTGACCGTACCCTCCAGTTC
3' ss Score
4.68
Exon sequences
Seq C1 exon
CCATCCTCAATGCGGCCAGGATACCTG
Seq A exon
GTGAGTGGAGCTGGCAGCTCTGACGGGAGGGAGAAGGGAGGAGGCCCACGCGCAGGCAGTGTCTATGTGTCCGTCCCCTGGGCACAGGTCAGAAAGGGGCTGGGGTGAGAGGGGGAAAGAGCTAGAGGGGAAGGGAGGCAGGAAGGAGACACGGATGCAAGGAGAAAGGCTTGAGAGATGCCAGGGCCAGAGGAGAGAGAGAGCCAGGAAGGTGAACAGAGTGGAAAGCAGGGTAAGGAAAGAGGGGGAGGGAGAGACCAGGTGCAGCTGACAAGGAGTGAGTGGAAAGGCCAGGGCCAGGTGAGGACCAGCAGAGAGTGAGGATGGAGGGAGGGATGGGACGGGGAGGTGGGCGGAGCTTGGGGTATGGGTGGAGCTTAGGATGTGGGTGGAGCTTGGGGTGTGGGTGGAGCTTGGAGTGCAAGTGAAACTTGGGATGTGGGTAGAGCTTGGGGACATGAACGGAGCTTGGGCTGTGGGCAAAGCTTGGGGTGCAGGCCTAGGGATTGGGATTCCGGGGGTGGGTTGTAGGAAGTTGGAGATAACAAAACTTGACCGTACCCTCCAG
Seq C2 exon
TTCCCCCAGCCTGTGGGAAGCCCCAGCAGCTGAACCGGGTTGTGGGCGGCGAGGACAGCACTGACAGCGAGTGGCCCTGGATCGTGAGCATCCAGAAGAATGGGACCCACCACTGCGCAGGTTCTCTGCTCACCAGCCGCTGGGTGATCACTGCTGCCCACTGTTTCAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005001:ENST00000161006:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.076
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.6=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTCAATGCGGCCAGGAT
R:
TCCTTGAAACAGTGGGCAGC
Band lengths:
198-766
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development