MmuINT0127426 @ mm10
Intron Retention
Gene
ENSMUSG00000045027 | Prss22
Description
protease, serine 22 [Source:MGI Symbol;Acc:MGI:1918085]
Coordinates
chr17:23996666-23997337:-
Coord C1 exon
chr17:23997311-23997337
Coord A exon
chr17:23996838-23997310
Coord C2 exon
chr17:23996666-23996837
Length
473 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GATGCCATCCCTTGTGCCAGTGT
3' ss Score
4.14
Exon sequences
Seq C1 exon
CTCCCATCAGTGCTGCCACCATCCGAG
Seq A exon
GTGAGTGTGATCAGGTTGCCTGGCTGGGTGGGGGTGGGGCAGTGGTGTGGACAGTCTTTGTATCTGACTCTATAGGGTAGGTCAGTGTGGGGACCCCAGTCACAGGGGAGCATGAGATTGAAGAGGATGGGATGGATACAGGCAAGAGGAGTTGTGTGGGTGGGTGGGGCTTAGGAAGGTGATGAATCTAGAGAAGGGAGGACAGAAGGGTGAGGGACCAACAGAACCAAAAAAATAAAGGTTAAGGGGAGTGGGAGGGAAGGCCAGATAAAGGAGAGAAGAAGGCAAGGGCCAGTCCCTGATAACTAAAGGGGACAGGGACAGGGCAGGCAGGCACTCTCCCTGCAGCAGCAGGCTGTGCTGGACACATGCTGTGCTGGGCACAGGTTTGAGGCCTTGCAGGGGGGTTGACAGGCAAGTCAGAAGACAATTGTGTCTACTGAGATGACAGAAGATGCCATCCCTTGTGCCAG
Seq C2 exon
TGTCCCCAGACTGTGGGAAGCCTCAGCAGCTGAACCGGATTGTGGGAGGTGAGGACAGCATGGATGCCCAGTGGCCCTGGATTGTTAGCATCCTCAAGAATGGCTCCCACCACTGTGCAGGCTCCCTGCTCACCAACCGCTGGGTGGTCACAGCCGCGCACTGCTTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045027:ENSMUST00000041649:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.6=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGTGCTGCCACCATCC
R:
CTTAAAGCAGTGCGCGGCTG
Band lengths:
193-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types