RnoINT0118689 @ rn6
Intron Retention
Gene
ENSRNOG00000039698 | Prss22
Description
serine protease 22 [Source:RGD Symbol;Acc:1310880]
Coordinates
chr10:13373346-13374024:-
Coord C1 exon
chr10:13373998-13374024
Coord A exon
chr10:13373518-13373997
Coord C2 exon
chr10:13373346-13373517
Length
480 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GACGCCATCCATTCTGCCAGGGT
3' ss Score
4.78
Exon sequences
Seq C1 exon
CCACAGTCAGTGCAGCCAACATCCGAG
Seq A exon
GTGAGTGTAAGCAGGTTGCCTGGGTGGGTGGGGGTGGGGCTGTGGTGTGGATGGTCTTCGTGTCTGACTCTAAGGGCAGGTCAGAAGTGGGGACCCCAGTCAGAGGGGACTGTGAGATTGAGGGGGAAGGGATGGATACAAGCGAGAAGAGATGGAGAAGGACTTAGCAAGGTGACAGACCGAGCGGAGAGAAGGCTGGGAGGACAGAAGGGGCCAACAGAACCAAAGAAATCAAGGTTAAGGGGAGTGGGAGGGAAGGCCAGATAAAGGAGAGAAGAGGAGAAGGGCCGGTCCCTGGTAACTGCAGGGGGCGGGGGAAGGGCAGGCAGGCAGCATGCCTCCTGCAGCAGTAGACTGTGCTGGGCACATGCTGGGCTGGGTACAGGTTTGAGGCCTCGGAGGGCACAGAGGTGGTTGGCAGGGAAGTCAGAAGGCAACTGTGTCTACTGAGATGATGGAAGACGCCATCCATTCTGCCAG
Seq C2 exon
GGTCGCCAGATTGTGGGAAGCCGCAGCAGCTGAACAGGGTCGTGGGAGGTGAGGACAGCGCGGATGCCCAGTGGCCTTGGATCGTTAGTATCCTCAAGAACGGCTCCCACCACTGCGCAGGCTCCTTGCTCACCAACCGCTGGGTGGTCTCAGCCGCACACTGCTTTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039698:ENSRNOT00000060888:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.155
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.6=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGTCAGTGCAGCCAACAT
R:
GCAGTGTGCGGCTGAGAC
Band lengths:
190-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]