HsaINT0132990 @ hg19
Intron Retention
Gene
ENSG00000178226 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:26906]
Coordinates
chr16:31154909-31157276:-
Coord C1 exon
chr16:31157110-31157276
Coord A exon
chr16:31155159-31157109
Coord C2 exon
chr16:31154909-31155158
Length
1951 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATGCAGTCATCTGCCACTAGGGT
3' ss Score
3.61
Exon sequences
Seq C1 exon
ATCCTCTGCCTCTCCCCTGGGTGCTACAGGAAGTGGAGCTAAGGCTGCTGGGCGAGGCCACCTGTCAATGTCTCTACAGCCAGCCCGGTCCCTTCAACCTCACTCTCCAGATATTGCCAGGGATGCTGTGTGCTGGCTACCCAGAGGGCCGCAGGGACACCTGCCAG
Seq A exon
GTGAGGGAAGGCCCCGGCACCTGCCTGGCAGGGCCAGAGTCCTAACCAGTGACAAATAGATAAAGGACATCTCTCCAAGCCTCATCTGCAAAAGGAGGGCAAGATTGCCAAGGGATGGGGTTGACGTGAAGTTTTTTGTTTGTGTATTTTGAGACAGAGCCTCACTTTGTCGTCCAGGCTGGACTGCAGTGGCGCAATCTCGGCTTACTGCAACCTCCCCCTGCTCCACCCCCACCGCTCAAGCGACTCTTGTGCTTCAGCCCCCCAAGTAGCTGAGATTACAGGCATGCACCACCACAGACTGCTAATTTTGCATTCACTTGCGCCTGGCCAAGTGAATTTATTTATGTATTTATTTATTTATTTATTTAATTTATTTTTTGAGACGGAGTTCCTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCAGTCGCCCAGGCTGGAGTGCAGTAGCATGATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCACGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTAGGACCACAGATGCCCGCCACGACGCCCAGCTAATTTTTTTTTTGTATTTTTAGTAGACACGGGATTTCACCAGGTTAGCCAGGATTGTCTCGATCTCCTGACCTCGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACCGCGCCCGGCCGAGACGGAGTTTCACTCTTATTGCCCAGGCTAGAGTACAATGGCACGATCTCAGCTCACCACAACCTCTGCCTCCCGGGTTCAAGCGATTGTCCTGCTTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTGCCACCACGGCCAGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTAGTCAGGCTGGTCTCGAACTCCCGACCTCAAATGATCCGCCTGCCTCGGCCTCCCAAAGTTCTGGGATTACAGGCGTGAGCCACCATGCCCAGCTATTTATTTATTTATTGAGACAGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCACGATCTTGGCTCACTGCAAACTCCACCTCTCGGGTTCAAGCAATTCTCCTGGCTCACCCTCCCAAGTAGCTGGGATTACAGGCATGAGCCACCATGCCCAGCCAAGGCCGAGTGAATTTAAAAACCAAAGACAGCATAGCCAGGAGCAGTGACTCATGCCTGTAATCCCAGCTAATCAGAAAAATTGAGGCGGGAGGATCACTTGAGCCCAGGAGTCTGAGACCAGCCTGAGCAACATAGTGATACCTCATCCCAAAAAAAGAGACAAACTGGCTGGGCACAATGGCTCACGCCTGTAATCCCAGCACTTTAGGAGACCGAGGCACGTGGATCACTTGAGGTCGAGAGTTTGAGACCAGCCTGGCCAACATGGCAAAAACCCATCTCTACCAAAAATACAAAAATTAGCCGGCTGTGGTGGTGTACACCTGTAGTCCCAGCTACTCGGGAAGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCAGAGGTTGCAGTGGGCTGAGGTTGCACCACTGCACTCCAGCCTGGGAGACAGAGCGAGATTCCGTCTCAAAAAAGAAAAGAAAGAAAGAAAAAGAAAGGGAAGGAAAGAAGGAAGGAAGGGAGGGAGGGGAATTATTTGAGCTAGTAACAACAAGAATCACTTGGCTCTAATGACAACTGCAGGATTATCTTGTGTGGCTTTGAATGCACTCCCCTGGTGCTCTTGGCTCTGGCTGCCATCGGCCTTCTGCTTACAGGGATTTCTTCTGTTTAGAGCCGCAGGGAATGCAGAGGACAAGGCCTAGCCAAGGAGGGTTTCTAGGAGAAGGGAGAAGGTGGTGTATGTTGGGCCAAAAGGAGGTGCAGGACCTTTTCGAGTAGGTCCCTGGGCTGACCCCTTGACATGCAGTCATCTGCCACTAG
Seq C2 exon
GGTGACTCTGGGGGGCCCCTGGTCTGTGAGGAAGGCGGCCGCTGGTTCCAGGCAGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGAAACCGCCCTGGAGTTTTCACTGCTGTGGCTACCTATGAGGCATGGATACGGGAGCAGGTGATGGGTTCAGAGCCTGGGCCTGCCTTTCCCACCCAGCCCCAGAAGACCCAGTCAGATCCCCAGGAGCCCAGGGAGGAGAACTGCACCATTGCCCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226-PRSS36:NM_173502:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.405
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCACCTGTCAATGTCTCT
R:
CAATGGTGCAGTTCTCCTCCC
Band lengths:
354-2305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)