MmuINT0127478 @ mm9
Intron Retention
Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine, 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:135080103-135084717:-
Coord C1 exon
chr7:135084551-135084717
Coord A exon
chr7:135080353-135084550
Coord C2 exon
chr7:135080103-135080352
Length
4198 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTTGAGTCATCTATCATTAGGGT
3' ss Score
3.85
Exon sequences
Seq C1 exon
TCCCTCTGCCTCTGCCCTGGGTTCTACAGGAAGTGGAGCTAAGGTTGCTGGGAGAGGCTGCCTGTCAATGTCTCTACAGCCGTCCTGGCCCTTTCAACCTGACTTTCCAGCTGTTGCCAGGGATGTTGTGTGCTGGCTATCCAGCGGGACGAAGGGATACCTGCCAG
Seq A exon
GTAAGATCTCCTAGCCCATAGGAAGCACCTAAGCAGTAGATGAAAATTTGAGCCTCATCTTCAATGGAATCTTATCTGGGGAGTATAGCTCATGGGTACAGTATGTGCCTAGCACCTAGGAGGTGCTAGGTTCAATCTCTGGCAACAAAACAAAACCCCAAAGACAGCCAATGGAGCCTGACATAGCAGGAAGCACTTGTAATCTTAGCACTTGGTAAATAGAGGAGAAGCCAGGTGAACCGCTCAGGGCCTGTCTGAGCTACATAGTGGTCATCCTAAGCTACGTGAGACCCTAGCTCAAAACAAAACAAAAGAGTATCAATGAGTAGGACTGGCACAAAGATTATAGATGGATGGATGGAAGCTAGGACTCAACACGTGTACTGTTACCCTTGGGAGTATGATGCAGCAGAGCCCCAGACTCCCAAGTGCCAATTGCTGCTACATCTACCCTGCATCCCATGAGGCAGGGGTTGTGGAACCCAAATTATGTCAAGTGAGAAAATGAAGAAAGGACAGACACACATACAGCAAAGCTGGGGTTAGATCCCCACGATAGCTGGGAACTTTGAGGTGTTCACTGGGCATAGCACAGTGACAAGGTTTAACTAGTCTTAGTAGGAGGTCTCTGTAGACCAATAGTTTGGGGCTGCAAACTTCTCAGAGGAAGCTGCAGCTGCTAGTCTTTACACACACTGATCACTTGTTTTGGACTCTGGAGTTGAGCTCTGCCACCCATCTTGAGCATGGCCCATATGTGGATACAGCTTTGCCAGTATCCCATGGTTCCAAGGCCTTGGAGCCCTTGACCTGGTCTCGTCCACGTCAACAGTATGCTCAAGAATTTGCTCTCTCGGGGCATCCTCCACTCCCTTTCACAAGTCCAGCGCCACCAGCTGTTAAATATTCAACTTTGCCAAATGTTCAAACTTCATATCTGGAAGATGAAAATAATATGCAAGTGTTGTTATCATAATTAATGACCTCACTAAGATCTAAAAAGCTATTAGCTATTATTTTTCTTTCTTTTTTTTTAAAGATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGATCTCCTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGAACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCGCTATTATTTTTCTTATTCCAAAGCCCAGCCTATATAACACAACACTTGTTGCTTAGTAGGTACCTAACAAATAATTATTGAGAAAAATGAATTCTTTTTTTTTTTTACTAATTTTTTAGATATTTTCTTTATTTACATTTCAAATGCTATCCCCTTTCCTAGTTTCCCCTCCGAAAATCCCCTATCCTCTCCCCCCACCCCCTGCTCCCCAACCCACCCACTCCAGCTTCCTGGCCCAGGCATTCCCCTATACTGGGGCATAGAACCTTCACAGGACCAAGGGCCGAATTAATTCTTCACAGAGGGAATTTTCCAGATAATTGGCTGATAGCCAAAACAGTATATTTGAAACAACTTTTTAAAGAAAATAACCCAGCATTCATGGTAATGGTGTGAATACAAAATAGATGGTTCTGGGGTTCCAGGACCCATTGACATAGTCAGTCTCTTAAAATTTTAGATTTTGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAGAGAAAGAAAGAAAGAAAAAAAGAAAGAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGACAGACAGACAGACTTGGGGTATAGCTCAGCTGTTAGAGTGCTTGGCTTAGCCAGCACCACCGGAGCTGAGCATGGAGGTCTATGCCTCTGGAGCTGAGCGTGAAGGTGTGTGCCTACAGCCCCAGAACTCATAAGTGAAGTGGTAGAAGCAGTTCAACAGGCCTGTATGTACGTTTGTGCGCCATGTGCATGACTGGTGCCCAAGGCAGTCAGAAGAGGGCATCAGATCTCTGGAACTGTTGTTACAGATGATTGTGAGCCACCATGTGGGTGGGAGTTGAATCTGGATCCTCTGGGAAGAGTAGCGAGTGCTCTTAAGCATCTCTCCAGCCCCAGATTTCTTTCTGACTCCTGAGCTGGGTTGGAGAACAGGCAACATAGAATAACAACGCCCCATACCAACCGTTTGTGTGTCTGCTCATTTTGGGTTTTCCTCACTTGATTTCACACTCCCCACTCTTTTTTTTTTCTCCTAAGAACTATTTATTTAATGTATGTAAGTACACTGTCTCCCTTCAGATACACCAGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTACCCGCTGAGTCATCTCTCCAGCCCCCACACTCCCCACTCTTAATGTATTTACTTATTTGTTCATGTATTCATTCATTCATAACCAGGATCTTTCTATGTTGCCTAAGGTGGTCTTTGACTCCTGAACTTAAGTGACTCTCCAGCCTCAGCCTCTTGAATCGCAGGCACTACAGATATAGACACCATACATGCTCCTTTAGCTATAATAATTGCCTAGTTCTACTCGGTTAGTATCTCTCAATGTCTTTACATTTATTTATTGTGTGTGCATTTTACACTCAATATGACCTTTAGCCATTTTTTGTTTATTTGTTTGGAGACAGTCTCCTGGAGCTCAGGTTAGCCTAAAAATAACTATGCCCTGATCCTTCATCTCCCATGTGTTAGGACTATAGGTATGTACCTTGGCTTTAATTTATTTTTTGTGTTTGTGTGTCTGAGTGTGTGCATATGGAGGCGGTGTTGTATGTGTGTGTGCAGGGGTGCAGGCAGAGGACAACCTCAGGTGTCATTGGACATACAGTCTACCTCCTTTAAGACAGGGTCTCTTGCAGAGGTGCAGTGGCACGTGCCTTTCACCCAGCACTCGGGATGCAGAGGCAGGCAGGGCTTTGCAACTCTGAGGCCACCCTGGTGTACAAATCAGATTCCAGGACAGTCAGGGCTGTTACACAGAGAAACCATGTCTTGAAAACTTAAAACAAACAATCAAAACAGGGTTTCTCATTGGCCTTGGGCTCACCAATTAGGCTAGACTGGCTGTCTATGCCTCTACAGTAGTGGACTTGCAAGCTCAAGTCACGACATTTTTACATGGGTTATGGAAATGGAACTTGGGACCTTAAACTTGTAAGGCAAGCACCAGGTGAGCAAGACCCCTCAGTATTTGATTGATTGATTGATTGATTTTAGAGACTACACTGGAACTCACTCTGTAGTCCAAGTTGGCCTTGACCTCAGAGATCTGTCTGCTTCTTCCTCTGGAGTTCTGGGATTAAAAATATACAACACCACCTCCCAGCTTTCTCAATTTACTTTTTAAAGGGGCAGAGCTCAGCATTTGTGAGACCCTGGGGTCAAGCCCAGCCCAAAACAAAACCTTGGGAGCTGCAACTTAGAAACCTTAGAAATCCAGTTGGAGAGATGGCTCAGTGGTTAAGAGCACTGTACTGGCAGGGCAGTGGTGGCGCACGCCTTTCATCCCAGTACTTGGGAGGCAGAGGCAGGCGGATTTTTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCAAAAACAAAAACAAAAACAAAGAGCACTGTACTGATTTTCTAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTGATGGGGATCCGACGCCCTCTTTTGGTGTGTCTGAAGACAGCTACAGTGTATTCATATAAATAAAAATAAATAAATCTTTAAAAAAAAAAAACCTCAGAAATCAGGGAGAATAGTTTAGGGGTGAATTATTTCCAAGAATCATTCAGGTCCAATGAGACCTTGTCTCCTGGCTTTAGCCAGTCTGTGGCTCTGTTTTACCGGACTTTCCTCTAAGTAGAGTTGTAGATAATACAAATGTGAAGATAGCTCAGGAAGGTTTCCAGAAGGTGGCTATATGTTAGGCCAAAATGGGGTAAGAATTCTTGAACTAATCTCTGACTTGAGTCATCTATCATTAG
Seq C2 exon
GGTGACTCTGGGGGACCGCTGGTCTGTGAGGACGGAGGCCGATGGTTCCTGGCCGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGGAACCGCCCTGGGGTCTTCACTGCAGTGGCTCCCTATGAGTCGTGGATTCGGGAACACGTGATGGGTTCAGAACCTGGGCCTGTCTTTCCCAGCCAGCTCCAGAAGCCACAGTCAGGACCCTGGGAGCCCAGAGAAGAAAACTGTACCTTTGCTCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371-Prss36:NM_001081374:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: