HsaINT1028216 @ hg38
Intron Retention
Gene
ENSG00000178226 | PRSS36
Description
protease, serine 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr16:31143588-31145955:-
Coord C1 exon
chr16:31145789-31145955
Coord A exon
chr16:31143838-31145788
Coord C2 exon
chr16:31143588-31143837
Length
1951 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATGCAGTCATCTGCCACTAGGGT
3' ss Score
3.61
Exon sequences
Seq C1 exon
ATCCTCTGCCTCTCCCCTGGGTGCTACAGGAAGTGGAGCTAAGGCTGCTGGGCGAGGCCACCTGTCAATGTCTCTACAGCCAGCCCGGTCCCTTCAACCTCACTCTCCAGATATTGCCAGGGATGCTGTGTGCTGGCTACCCAGAGGGCCGCAGGGACACCTGCCAG
Seq A exon
GTGAGGGAAGGCCCCGGCACCTGCCTGGCAGGGCCAGAGTCCTAACCAGTGACAAATAGATAAAGGACATCTCTCCAAGCCTCATCTGCAAAAGGAGGGCAAGATTGCCAAGGGATGGGGTTGACGTGAAGTTTTTTGTTTGTGTATTTTGAGACAGAGCCTCACTTTGTCGTCCAGGCTGGACTGCAGTGGCGCAATCTCGGCTTACTGCAACCTCCCCCTGCTCCACCCCCACCGCTCAAGCGACTCTTGTGCTTCAGCCCCCCAAGTAGCTGAGATTACAGGCATGCACCACCACAGACTGCTAATTTTGCATTCACTTGCGCCTGGCCAAGTGAATTTATTTATGTATTTATTTATTTATTTATTTAATTTATTTTTTGAGACGGAGTTCCTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCAGTCGCCCAGGCTGGAGTGCAGTAGCATGATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCACGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTAGGACCACAGATGCCCGCCACGACGCCCAGCTAATTTTTTTTTTGTATTTTTAGTAGACACGGGATTTCACCAGGTTAGCCAGGATTGTCTCGATCTCCTGACCTCGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACCGCGCCCGGCCGAGACGGAGTTTCACTCTTATTGCCCAGGCTAGAGTACAATGGCACGATCTCAGCTCACCACAACCTCTGCCTCCCGGGTTCAAGCGATTGTCCTGCTTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTGCCACCACGGCCAGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTAGTCAGGCTGGTCTCGAACTCCCGACCTCAAATGATCCGCCTGCCTCGGCCTCCCAAAGTTCTGGGATTACAGGCGTGAGCCACCATGCCCAGCTATTTATTTATTTATTGAGACAGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCACGATCTTGGCTCACTGCAAACTCCACCTCTCGGGTTCAAGCAATTCTCCTGGCTCACCCTCCCAAGTAGCTGGGATTACAGGCATGAGCCACCATGCCCAGCCAAGGCCGAGTGAATTTAAAAACCAAAGACAGCATAGCCAGGAGCAGTGACTCATGCCTGTAATCCCAGCTAATCAGAAAAATTGAGGCGGGAGGATCACTTGAGCCCAGGAGTCTGAGACCAGCCTGAGCAACATAGTGATACCTCATCCCAAAAAAAGAGACAAACTGGCTGGGCACAATGGCTCACGCCTGTAATCCCAGCACTTTAGGAGACCGAGGCACGTGGATCACTTGAGGTCGAGAGTTTGAGACCAGCCTGGCCAACATGGCAAAAACCCATCTCTACCAAAAATACAAAAATTAGCCGGCTGTGGTGGTGTACACCTGTAGTCCCAGCTACTCGGGAAGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGCAGAGGTTGCAGTGGGCTGAGGTTGCACCACTGCACTCCAGCCTGGGAGACAGAGCGAGATTCCGTCTCAAAAAAGAAAAGAAAGAAAGAAAAAGAAAGGGAAGGAAAGAAGGAAGGAAGGGAGGGAGGGGAATTATTTGAGCTAGTAACAACAAGAATCACTTGGCTCTAATGACAACTGCAGGATTATCTTGTGTGGCTTTGAATGCACTCCCCTGGTGCTCTTGGCTCTGGCTGCCATCGGCCTTCTGCTTACAGGGATTTCTTCTGTTTAGAGCCGCAGGGAATGCAGAGGACAAGGCCTAGCCAAGGAGGGTTTCTAGGAGAAGGGAGAAGGTGGTGTATGTTGGGCCAAAAGGAGGTGCAGGACCTTTTCGAGTAGGTCCCTGGGCTGACCCCTTGACATGCAGTCATCTGCCACTAG
Seq C2 exon
GGTGACTCTGGGGGGCCCCTGGTCTGTGAGGAAGGCGGCCGCTGGTTCCAGGCAGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGAAACCGCCCTGGAGTTTTCACTGCTGTGGCTACCTATGAGGCATGGATACGGGAGCAGGTGATGGGTTCAGAGCCTGGGCCTGCCTTTCCCACCCAGCCCCAGAAGACCCAGTCAGATCCCCAGGAGCCCAGGGAGGAGAACTGCACCATTGCCCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226:ENST00000268281:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.405
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCACCTGTCAATGTCTCT
R:
CAATGGTGCAGTTCTCCTCCC
Band lengths:
354-2305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains