HsaINT0137657 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:102595305-102595784:-
Coord C1 exon
chr7:102595634-102595784
Coord A exon
chr7:102595370-102595633
Coord C2 exon
chr7:102595305-102595369
Length
264 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGG
5' ss Score
4.09
3' ss Seq
ACTGGGACCTCTGTTTGTAGGTG
3' ss Score
7.85
Exon sequences
Seq C1 exon
GGCCCAGGGCAGCTGATCCCACTCATCGAGGAGACAACCAGCACCGAGTGTCGCCAGGACGTGGCCACGAACCTGCTCAAGCTCTTCCTGGGGCAGGGGCTGGCCAAGGACTTCCTGGACCTGCTCTTCCAGCTGGAGCTGAGTCGCACCA
Seq A exon
GTGAGGCCTGGGAAGGAGCTGGGCCCAGAACACTGGGAGGTGTTTGGGGGTGGGTGGGCTCCTCCTGTAGGAGGCAGATGGGGTCAGAGAGGAGGGAGGCAAGGAACAGAGCCAAGGGCAGAGGTGGGACAGTGGGCTGGGAGGTGGCGAGGAGGCCCTTTATTGAGGGGCCAGCTTAGATCCCCCAGCCCCAAGGTCCTCTGTCCTCCCCCTCCCCCAAAAGCTTTGTGCCAGCCCCCTACCCACTGGGACCTCTGTTTGTAG
Seq C2 exon
GTGAGACCAACACCCTGTTCCGGAGCAACTCTCTGGCCTCAAAGTCCATGGAGTCTTTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105808:ENST00000262940:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PU(6.8=25.5)
A:
NA
C2:
PF0061614=RasGAP=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCAGCTGATCCCACTC
R:
CTTCAGAAAAGACTCCATGGACT
Band lengths:
212-476
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains