HsaINT0137663 @ hg19
Intron Retention
Gene
ENSG00000105808 | RASA4
Description
RAS p21 protein activator 4 [Source:HGNC Symbol;Acc:23181]
Coordinates
chr7:102230606-102232901:-
Coord C1 exon
chr7:102232732-102232901
Coord A exon
chr7:102230744-102232731
Coord C2 exon
chr7:102230606-102230743
Length
1988 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTCCTCCCTGCCTGCCCCAGAAA
3' ss Score
7.86
Exon sequences
Seq C1 exon
AGCTGGACCTGCAGCGGACGCTGAGTTTGCAGGCGCCACCTGTGAAGGAGGGGCCACTCTTCATCCACAGGACCAAGGGCAAGGGCCCCCTCATGTCCTCCTCCTTCAAGAAGCTCTACTTCTCCCTCACTACCGAGGCCCTCAGCTTCGCGAAGACGCCCAGCTCCAAG
Seq A exon
GTGGGTAAGGAGGGAGGCCGGCAAGTGGGGCTCTGAGAGGCCGGCAAGTGGGGCACCTGTCCCCTTCCTTGGAGCCCACTTGAGGTACCCCCGGGGTCAGAGAAGAAAGCCAGGTGTGTGGCATCTGTACTGCTTGTCAGAACCTAGGAGGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGGACTTTGGGAGGCCAAGGCGGGTGGATCACTTGAGGTTAGGAGTTTGAGACCAGCCTGGCCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAAAATCAGCCGGGTGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCACGGGAATCGCTTGAACCTGGGAGGCAGAAGTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAACCTGGGCAACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAATGAATATGGAGGAAGTTGATCCGACCTTACCAGGTTGTTGAGGATTAAATGAGATGATCTCCCTAAGGGTCCTGACCCAGGGCCTGGCAGGTAGTACTATTTAGGCAAATGATATTATTAAAGATAGTATATCACCTGGGCTGCTAGATGAGTAGGAGGCTAGGGCAAACAGGGGAGGCTTCCTGGAAGAGGCAGGAATATAGAAGCACGGAATCTTGGCGTGGGAAGGGATCTCAAAGATCACCTTGTACAGCCCTCTCTGAGTCATGGGTCACCTCTCCTGCAAGCTCTCTTCTCCCAGGAAGGGCTGAGGACATACTTCCTCCATGGACCTGGTGACTGCTTGCTGTACACCTGCCCCCAGTCATGCAGGCTATGGGGATGATCTTCCAGGAGTACCCAGCCTAGCCCTGGGCAGGTGAGAGCGGGCTAGGAGTAGGTGAAGGAGCTCATCACCCACCCTGTTCTCAACCAGCTCAGGGGTCCCACCAGATGAGGGGCCCGCCCCTTCCGACCAAAGACCCCTCAGATGATGATAATTATTTTTTGAGACAGGGTCTTGCTCTGTCACCCAGGCTGTAGTGCAGTGGTGCGATCATAGCTGACCGCAGCCTCAAACTCCTGGGCTCAAGCAATCTTCCTACCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACGTGCCACCAAGCCCAGCTAATTTTCTTTAACTTTTTTTTTTGCGGAGATGGGGTCTTGCTATGCTGCCCAGGCTGTTCTCAAACTCCTGGCCTCAGGCAATCCTCCTGCCCCAGCCTCCCAAAGCACTCAGATGATTATTATACATCTTCCTTGCCAGGGTTGAAAGATTTGACTACATGGGCATTATTTAATTCTGGTCCCATTTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTTTTGTTGCCCAGGCCAGAGTGCAATGGTGCGATCTTGGCTCACCGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCATGCCCGGCTAATTTTGTATTTTTAGTAGACACAGAGTTTCTCCATGTTTGTCAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCTTCCTCGGCCTCCCAAAATGCTGGGATTACATGTGTGAGCCACTGCGCCCGGTCAGGATATGACTATTAGAGCCTGGGACTACAAAAGCAAGTTGGAAAATTAATAAATGCAAAGTCACAAAGCCTTGGCCACGGCCGGATTGACTTTGTAGCCCAGGGAATGCTGGCTGTCCCGACACTACCCCAAAGCTCACACCTCCGAGGCCTTCTGGGAGTGCCCCCCAGAGAGGCCAGGTCCTCCTCTCCCAGTTGCTGGGCACTTGGTCACCATCAGTCTGTGCTCTGCCCTGGCTGAGGTCACTCTAGGTCTCCCATGCCTACCCCTGGTGCTGCAGAAGGGGAGACTGAGGCCCAGAGATGGGGAATGGAATGCCCCTGGCTAGGTCCCTGAGCCTCCTCCTCCCTGCCTGCCCCAG
Seq C2 exon
AAAAGCGCCCTCATCAAGTTAGCCAACATCCGGGCAGCGGAAAAGGTTGAGGAAAAGAGCTTTGGCGGCTCGCACGTCATGCAGGTCATCTACACGGACGACGCCGGCAGGCCCCAGACTGCCTACCTGCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105808-RASA4:NM_006989:16
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(40.6=75.4)
A:
NA
C2:
PF0016924=PH=FE(42.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACGCTGAGTTTGCAGG
R:
CTTGCACTGCAGGTAGGCA
Band lengths:
294-2282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)