HsaINT0137663 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:102590159-102592454:-
Coord C1 exon
chr7:102592285-102592454
Coord A exon
chr7:102590297-102592284
Coord C2 exon
chr7:102590159-102590296
Length
1988 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTCCTCCCTGCCTGCCCCAGAAA
3' ss Score
7.86
Exon sequences
Seq C1 exon
AGCTGGACCTGCAGCGGACGCTGAGTTTGCAGGCGCCACCTGTGAAGGAGGGGCCACTCTTCATCCACAGGACCAAGGGCAAGGGCCCCCTCATGTCCTCCTCCTTCAAGAAGCTCTACTTCTCCCTCACTACCGAGGCCCTCAGCTTCGCGAAGACGCCCAGCTCCAAG
Seq A exon
GTGGGTAAGGAGGGAGGCCGGCAAGTGGGGCTCTGAGAGGCCGGCAAGTGGGGCACCTGTCCCCTTCCTTGGAGCCCACTTGAGGTACCCCCGGGGTCAGAGAAGAAAGCCAGGTGTGTGGCATCTGTACTGCTTGTCAGAACCTAGGAGGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGGACTTTGGGAGGCCAAGGCGGGTGGATCACTTGAGGTTAGGAGTTTGAGACCAGCCTGGCCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAAAATCAGCCGGGTGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCACGGGAATCGCTTGAACCTGGGAGGCAGAAGTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAACCTGGGCAACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAATGAATATGGAGGAAGTTGATCCGACCTTACCAGGTTGTTGAGGATTAAATGAGATGATCTCCCTAAGGGTCCTGACCCAGGGCCTGGCAGGTAGTACTATTTAGGCAAATGATATTATTAAAGATAGTATATCACCTGGGCTGCTAGATGAGTAGGAGGCTAGGGCAAACAGGGGAGGCTTCCTGGAAGAGGCAGGAATATAGAAGCACGGAATCTTGGCGTGGGAAGGGATCTCAAAGATCACCTTGTACAGCCCTCTCTGAGTCATGGGTCACCTCTCCTGCAAGCTCTCTTCTCCCAGGAAGGGCTGAGGACATACTTCCTCCATGGACCTGGTGACTGCTTGCTGTACACCTGCCCCCAGTCATGCAGGCTATGGGGATGATCTTCCAGGAGTACCCAGCCTAGCCCTGGGCAGGTGAGAGCGGGCTAGGAGTAGGTGAAGGAGCTCATCACCCACCCTGTTCTCAACCAGCTCAGGGGTCCCACCAGATGAGGGGCCCGCCCCTTCCGACCAAAGACCCCTCAGATGATGATAATTATTTTTTGAGACAGGGTCTTGCTCTGTCACCCAGGCTGTAGTGCAGTGGTGCGATCATAGCTGACCGCAGCCTCAAACTCCTGGGCTCAAGCAATCTTCCTACCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACGTGCCACCAAGCCCAGCTAATTTTCTTTAACTTTTTTTTTTGCGGAGATGGGGTCTTGCTATGCTGCCCAGGCTGTTCTCAAACTCCTGGCCTCAGGCAATCCTCCTGCCCCAGCCTCCCAAAGCACTCAGATGATTATTATACATCTTCCTTGCCAGGGTTGAAAGATTTGACTACATGGGCATTATTTAATTCTGGTCCCATTTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTTTTGTTGCCCAGGCCAGAGTGCAATGGTGCGATCTTGGCTCACCGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCATGCCCGGCTAATTTTGTATTTTTAGTAGACACAGAGTTTCTCCATGTTTGTCAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCTTCCTCGGCCTCCCAAAATGCTGGGATTACATGTGTGAGCCACTGCGCCCGGTCAGGATATGACTATTAGAGCCTGGGACTACAAAAGCAAGTTGGAAAATTAATAAATGCAAAGTCACAAAGCCTTGGCCACGGCCGGATTGACTTTGTAGCCCAGGGAATGCTGGCTGTCCCGACACTACCCCAAAGCTCACACCTCCGAGGCCTTCTGGGAGTGCCCCCCAGAGAGGCCAGGTCCTCCTCTCCCAGTTGCTGGGCACTTGGTCACCATCAGTCTGTGCTCTGCCCTGGCTGAGGTCACTCTAGGTCTCCCATGCCTACCCCTGGTGCTGCAGAAGGGGAGACTGAGGCCCAGAGATGGGGAATGGAATGCCCCTGGCTAGGTCCCTGAGCCTCCTCCTCCCTGCCTGCCCCAG
Seq C2 exon
AAAAGCGCCCTCATCAAGTTAGCCAACATCCGGGCAGCGGAAAAGGTTGAGGAAAAGAGCTTTGGCGGCTCGCACGTCATGCAGGTCATCTACACGGACGACGCCGGCAGGCCCCAGACTGCCTACCTGCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105808:ENST00000262940:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(40.6=75.4)
A:
NA
C2:
PF0016924=PH=FE(42.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACGCTGAGTTTGCAGG
R:
CTTGCACTGCAGGTAGGCA
Band lengths:
294-2282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains