HsaINT0137669 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:102608761-102609454:-
Coord C1 exon
chr7:102609341-102609454
Coord A exon
chr7:102608823-102609340
Coord C2 exon
chr7:102608761-102608822
Length
518 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCTCCGTCTCCCTCCTCTAGCCG
3' ss Score
10.57
Exon sequences
Seq C1 exon
GACAGCCACAGTGTGGAAGACCCTGTGCCCCTTCTGGGGTGAGGAGTACCAAGTGCACCTGCCGCCCACCTTCCACGCTGTGGCTTTCTATGTCATGGATGAGGATGCCCTCAG
Seq A exon
GTGAGTGCCCCCCTCTCCAGCTGGGACCCAGACCTGGCCATCTGATTGCTCCCTGGCCCATTTCACCACCAGGACTCCTGGGTCCTTTTTGGCATCCTCTTTGCAGCCTGGAGGGAGGCAGAGCCTGGGGGCCTGGGAGGGCGAAAAGCTTGAGCGTGTGGGTGTGCACATGCGTGGCTCCATGGTGCATGCGCCACATACACACGTGTGTGTGCAGGCATGCAGGCACAAGTGTGCATGGACTACACGTGTGCGTGCAGGTGTGAGCTGTGAGATGGGCACCCAGAGAGTGTGAGCTTGGCATGTGTGGGCATGTGAGAAACCTATCACATCCCCCTAGAGGGTCCAGAACCCACAGCCTACAGAAGGGCCACAGGTCCAGCTCTGTTGGGTTACTCTGGAAATGACAGCGGTGTCCACCACCCTGCTCCCCCCGGGGGGGCCCTGAACTTGGTGGGAGGTCCCAGAGGGCAGATACTGAAGCCCTGCCCAGCTCTGCCTCCGTCTCCCTCCTCTAG
Seq C2 exon
CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAGCCTCTCACCCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105808:ENST00000262940:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.3=100)
A:
NA
C2:
PF0016825=C2=PD(11.0=40.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains