HsaINT0137674 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:102596012-102599954:-
Coord C1 exon
chr7:102599860-102599954
Coord A exon
chr7:102596130-102599859
Coord C2 exon
chr7:102596012-102596129
Length
3730 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
3' ss Seq
TCACAGGCTGCCCATTCCAGGGG
3' ss Score
4.63
Exon sequences
Seq C1 exon
GTGGTGATTGATGTCCAGAGACTGCGGGTGGTGCAGCAGGAGGAGGGCTGGTTCCGGCTGCAGCCCGACCAGTCCAAGAGCCGGCGGCATGACGA
Seq A exon
GTAAGTGCATGGAGCTGGGCAGCCGGCCTCAAGGGGTGGGGTGGGGGCTGACATTTGGGAATTGGCTACAGGCAGGCAGGGCAGGGGGGCTGCTCAGGGTGAGAGGTCAGGAGACACAGCTCCAGGGTCCCCTCAGCCCCTGCCCACCTAGCCAGCATCCTTCTCATCCTGGCTGGGCTCCACCTCCCCTTTATTTATTATTTATTTATTTATTTATTTATTTTGAGATGGAGTCTCACTCTGTCCCCAGGCTGGAGTGCAATGGCGTGATCTCGACTCACTGCAGGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACCGCGCCTGGCTAATTTTTTGCATTTTTAGTAGAGACAGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCACCCGCCTCGGCCTCCCCAAGTACTGGGATTACAGGCATGAGCCACCGCGCCCGGCCCCTCCCCTTTATTTTTCCCCACAGTTCTGCATTCAGCTCAGCTCTGTCTTCTGTCTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGCGGCACAATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCCAGTGATTCTCCTGCCTCAACCTCCTGATTAGCTGGGATTACAACTGTGTACCACCATGCTCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAAGTTGGTCTCGAACACCTGACCTCAAGTGATCCACCCGCCTCAGCCTGCCAAAGTGCTAGGATTACAGGCATGGGCCACCGCACCCGGCCAGGTCTGTCTTCTTAGCTCACAGGTTGTACAGGTCTCCTGCTTTCTGCCTCTGGAAGTTTCTGAAACAAGTACTCAGACATTTTCCCTTTGAAAATTTCCCTGCAGACCTCAGACCAGGGTTCAAGTCTCCAAGGTCAGTGTCCCTGAGCCATAGCTCCAACTCCCTATGCCAGATTCTCCAGGAATAGGGTTGTGAGATAAGATAGGACACCATTGGCCAGGAGCGGTGGCTCATGCCTGTAATCCCAGCTCTTTGGGAGGCCAAGGTGGGAGGATCACTTGGGGCAAGGAGTTTGAGACCAGCCTGGGCAAGAAAGTGAGACTCCGTCTCTACAAAGAAATAAAAATTAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGTCGAGGTGGGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAGATGGCGGGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGCAGAATTGCTTGAACCCCGGAGGCAGAGGTTGTAGTGAGCCAAGATTGCGCCATTGCACTCTAGCCTGGGTGACAAAGCTAGACTCTGTCTCAAAAAAAAAAAAGAACACCCAGTTAAAACTTAATTTCAGATAAAAGTGAATATATATATATATATTTTTTTTTTTTGAGCAGAATCTCACTCTGTCACCTAGGCTGGATGGAGTGCAGTGGCACGGTCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCATGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCACCTGTACCACCAGTACAGTGGTGATCATAGCTCACTGTAGCCTCCACCTCCTGGGTGCAAGCAATCCTCCCATCTCAACGTTCCAGGTAGCTAGGACCACCTCACCTGGCTAAATTTTTGTAGTTTTAGTAGAGATGGGGTTTCACCGTGATGGCCGGGCTTGATGTTGAACTCCTGACCTGTGCCCGGCTGTGAATACATTTTTAGTATAAAAATAACCGCTGGGCGTGGTGACTCACACCTGTAATCCCAACACTTTGGGAGTTTGAGGTGGGTGGATCACTTGAGGTCACGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACACCGTCTCTACTAAAAGTACAAAAAATGGTGGTGGGCACCTGTAATCCAAGCTACTGAAGCAGGATAATTGCTGGAACCCAGGAGACGGAGGTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTCGGTGACAAGAGCGAAACTCCGTCTCAAGAAAACAGCCGGGTGCGGTGGCTCATGCCTGTAATCTCAGCACTTTGGGTGGCCGAGGCGGGTGGATCATGAGATCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAATCCCGTCTGTACTAAAAATACAAAAATTACCCGGATGTGGTGGCGGGCACCTCTAATCTCAGCTACTTGGGAGGCTGAGGATGGAGAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAGCAGGACTCCATCTCAGCAAAAAAAAAAATAAATAAAGAAGAAGAATGACCATGCACTATTTGAGACATACCTATACTAAAAATATTCAAATTTAGGCCGGGTATGGTGGCGCATGCCTGTAATCTCAGCACTTTGGGAGGCCAAGGCAGGAGGATCACTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCAACATAGCAAGACCCCATCTCTAAAAAAAATAGTTAATAAGTAAATAAAATATTCACATTTAACTGGGTGTCTTGGGTCGTTTTGCTAAATCTGGCAGCCTGTCTAGGAAGCCCTCTGGCTTGTTTGCTGTGGCCCACAGCCCTCAGTGGTTCAGCTTTGTGTCTCTGTGGAAGGCCCCAGACCCCCATTCCCCCAGTTCCCATCCTTAACAGGGTAGGAGCAGGTGGACGGCTGTGTGTCCAGCACAAGGTGTTTCCATAGAACCAGCCAAGGCCCATCTTGCCATCTTATTTTTTATTTATTTATTTTTTTTGAGACAGAGTCAGGCTGGAGTGCAGTGGTGCAATCCTGGCTCACTGCAACCTCTGCTTCCTGGGTTGAAGCGCTTCTCCTGCCTCAGTCTCCCGAGTAGCTGCGATTACAGGCACCTGCCACAATGCCTGGCTAATTTTTATATATATATTTTAATAGAGATGGGGTTTTGCCGTGTCAGCCAGGCTGGTCTTGAACTCATGACCTCAAGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGAGATTACAGGCATGAGCCACTGCGCCAGGCCCAGGGGCCCATCTTAACGCTGCTCTGTGCATGAGGCTTGTGCTGAGCAGGGGCAGTGGGAGCCTTAGAGGTTCCCACTTGGTCCACACCCTCCTCTGTTCTGAACTTCCCTATCAGAACAGGGAAGCTGGGAAGCTCAATCTAATGTGGCAAGTTGCTGAACTGGCTCGGGTCTCAGTTTCCCTATTAGGTTGTTATGAGGGTTGGGGATTTGCTTCTGCTGTAAAGTGTACCCATGATGGTGCCATTATCTGGGAGTTGATCGATTCAAGGCTGGCAGCTCCACATACCCAAGCTTGGAGGTGGCAGGGAGCCAGACCTCGAAGACAGATAGAGGTGCCTTGAGTGCAGAGACAGGAAGGGCTTTCCAAAAACAGAAAATAAATAGCCCGGGCAGAGCCTGGGAGGCAGAGCTATGCAGGGCACCCGGATGGAGGGCATGAGCAGAGAGATGGGAAGCCGGCCCCAAGGGAAAAAACTGGAGGCCGTGGGAGTGGTGTGGTCCAGGGTGGCCTGAGTCCCTGGTGGAGAGGTCACAGGCTGCCCATTCCAG
Seq C2 exon
GGGCAACCTGGGCTCCTTGCAGCTGGAGGTGCGGCTGCGGGACGAGACGGTGCTGCCCTCCAGCTACTACCAGCCACTGGTGCACCTGCTGTGCCACGAGGTCAAGCTGGGCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105808:ENST00000262940:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(1.2=3.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains