HsaINT0137712 @ hg38
Intron Retention
Gene
ENSG00000075391 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr1:178452416-178454648:+
Coord C1 exon
chr1:178452416-178452652
Coord A exon
chr1:178452653-178454446
Coord C2 exon
chr1:178454447-178454648
Length
1794 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
TTTCTCATCCTCTACTTCAGGTT
3' ss Score
9.93
Exon sequences
Seq C1 exon
TGTTTTCCCTCGTGAGTTGAAAGAAGTGTTTGCATCATGGAAGCAGCAGTGCCTGAACCGTGGCAAGCAAGACATCAGCGAGAGGCTCATCAGTGCCTCATTATTTCTCCGTTTTCTGTGTCCAGCCATTATGTCTCCCAGTCTTTTCAACCTTATGCAGGAGTATCCTGATGACCGCACATCTCGGACTCTAACTCTTATTGCCAAGGTCATTCAGAACCTGGCCAACTTTGCCAA
Seq A exon
GTAGGTGATACTGTTGTAACCACTTTAAAAACACAGTTTAAAAAATACTTGAGGCCTAAAATTTGGATGAGGGTTGGGAGCCTCATCACTCATGTTACCAGATTTTCACTGTGTTATTAATAAATATAGCAAAAAAATGGAAACAACTTAATCACTTCATAGAGGAATGGTTAAGTAACCTATGATACATGCATTCAATGGAATATTTGCAGGCACTACAAACTGTTTACAAAAACTATCTAATAATATAGAGCATGAAGATAAAATTATATTAAAAGTGCTGATAAAAATACTTTAGTGGGAAAAAAAGGGCAGAATAAAAAGTGGTATGTATACTGTTATCCCAGCAATATGAAAACACAAAAATCTAAGTATAAAAAAAGTTGGGAAGAAAAGACAAATTCTGCGGTTACAATGTCTAAGACAATTATCCTGGCCACTTCAAAAAAGACAATTTTATGAAAAATGCAAAAGATGGAGGGGGGCTGTTCTAGATTAAAAGAGATTAAATGCAATACTTGAAACTTATTTGGATCTTAAGTTGGAAAAATATATATATATGTCCTTTTGGGGGCAATGGGTGGAATTTAAATATATAGATAAGATAATTCGTGAATAATGTTTTTAAAAGTTTTAGTGTGATAATAGCATTGGTTTATGTAAGAGATATTCCTTATTCTGAAGAAATGGACGCTAAACTATTTAGAGGTGATGTCTGCAACTTAGTTTAAAATGGTTCCAGAAAGAAAAAAAAAAAAATCTGTCTAGAAAGAGAGGGTGTGAAAGCAAACTTGGCAAATATAACAGTTGGTTATTGTAGATGAAAGGCATATGGGTATTCATTGTATATTCTTTCAACTTTTCTGTAGGTTTAAAATTTTTCAAAAGAAAATTAGGAGAAAACAGTTGGGAAGGAAATGTACTAAAATATAAACAGCAGATATATTTGGGTAGCTTGAATGATACATCCACACTTTTTTCTTTCTACTTTTCATTGTTTCAAACTTTTTTCAGTAAGTTTATGATATTTTTATAATTTATAGAAAATAAATTTAAGAAATGGCTGGGAAGGAATTCACATTTACAGAACTGACCACAGATTTACTCAGTATTGATGCTTAAAGACAAGTTTCTGTTAGCAATGTATTGAAGAAAAAAATTGGAACTTCAGTGAACAGATTGTTTTCTAGTATAAGTGGTGGCTTTTTAGAGGTGTACTATTTTAATTTTGTATAATTTATATATAAGCCAATGCAGAAATATACATATTTATCGATATTTGAGCTAAAAATATTTATATTTTATTTTGGAACAGGTTTTATGGACTTAAACTAGGCCCTGCAGATAGCTAGAATCTAGATAGGCAAAGGAGAGAAGTTTTTCTCTAGTGCAAGTAAATAGCATGGGCAAAAGCTTGGAGAAGAAAAAAATGTGTAATATATTTGGGAGACTTTGTAGAAGCTAGCAGTATTGAAGGTTTGTACTGGTGAGCTTTTGGTAGGTAAGTGAGGGCTATATTGCAGAGAAATTTAAATCCCAGAACTAAAAAAAAAAAAAAAAAAAGGAGTTTTGGCTTTACCCTTTAGAGAGAATAGAAAGCTATTCTCAAAGCATTAGAATATTAAAGTGATATTAAGAAAGTATGTTATAACATTTATCACTTATAGATAATAAACAAAATTAGTCATTCCCTCCACAAAATAAAAAAAAGTAATAGTTCTGTGTAATGTCAAATCAAAATGATCATATCTCTCTTGAATATGTTCTTTCTCATTTTCTCATCCTCTACTTCAG
Seq C2 exon
GTTTGGTAACAAAGAGGAATACATGGCATTCATGAATGATTTTTTAGAACATGAATGGGGTGGAATGAAGCGCTTTCTTTTGGAGATCTCTAATCCAGACACCATCTCAAACACCCCAGGCTTTGATGGTTACATTGATCTGGGCCGAGAGCTTTCAGTTTTGCATTCCTTACTGTGGGAAGTAGTTTCCCAACTTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075391:ENST00000462775:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(44.2=95.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCATCATGGAAGCAGCAGT
R:
CGGCCCAGATCAATGTAACCA
Band lengths:
355-2149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development