HsaINT0137726 @ hg19
Intron Retention
Gene
ENSG00000105122 | RASAL3
Description
RAS protein activator like 3 [Source:HGNC Symbol;Acc:26129]
Coordinates
chr19:15572029-15572418:-
Coord C1 exon
chr19:15572282-15572418
Coord A exon
chr19:15572108-15572281
Coord C2 exon
chr19:15572029-15572107
Length
174 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CCACTCCTGCGGGAGAACAGGGT
3' ss Score
-3.66
Exon sequences
Seq C1 exon
AGCTGGAGCCGGAGCCAGAGCTGGAGCCCCCTACCCCACAGATCCCTGAGGCCCCCACACCCAACGTGCCTGTCTGGGACATTGGGGGCTTCACCCTGCTTGATGGGAAGCTGGTGCTGCTTGGAGGAGAGGAGGAG
Seq A exon
GTGAGAGGGGGCACCTGGGAAAGGGGAGGAGGGAAGAAAGAAAAAGGAGGAGGGCAGAACAGAGGCAGGGGCTGGAGGGAGGATAATGGGAAGGTGTCTGCCTCTCCCTCGGTCTGCCTGCCTGCCTGCCTGCCTGCCTCCCCTCTCTGACTACCCACTCCTGCGGGAGAACAG
Seq C2 exon
GGTCCTCGAAGGCCCCGGGTGGGAAGTGCTAGCTCCGAGGGCAGCATCCACGTGGCCATGGGGAACTTCAGGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105122-RASAL3:NM_022904:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.826 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCCGGAGCCAGAG
R:
CTGGATCCCTGAAGTTCCCCA
Band lengths:
214-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)