MmuINT0132057 @ mm9
Intron Retention
Gene
ENSMUSG00000052142 | Rasal3
Description
RAS protein activator like 3 [Source:MGI Symbol;Acc:MGI:2444128]
Coordinates
chr17:32536030-32536374:-
Coord C1 exon
chr17:32536235-32536374
Coord A exon
chr17:32536109-32536234
Coord C2 exon
chr17:32536030-32536108
Length
126 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CCACCTGTATGGGGGGACAGGGT
3' ss Score
1.52
Exon sequences
Seq C1 exon
AGCCAGAGCTGGAGTTGGTAGCAGACCCAGATCTACCCGTTGCACAGATCCCTGAGCCTCCCACCCCGGACATGCCTGTTTGGAACATTGATGGCTTTACCCTTCTCGAAGGAAAGCTGGTGATGCTCGGTGAGGAGGAG
Seq A exon
GTAAGCAAGGCCAGGGAAGGACAGGGAGGGACAGGACAGAGGCGGTGGTAGAGGGTAAACACCAGAAATGTGTGTGCCCCCTTATGTGCCCCCCCTTTCTGACTGCCCACCTGTATGGGGGGACAG
Seq C2 exon
GGTCCTCGCCAAATCCGAGTGGGAAGCGCCAGTTCAGAGAACAGCATGCAGGCAGCTTTGGGGAACCTCAAGGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052142-Rasal3:NM_178785:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.634 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCTGGAGTTGGTAGCAG
R:
CCTTGAGGTTCCCCAAAGCTG
Band lengths:
210-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: