RnoINT0124521 @ rn6
Intron Retention
Gene
ENSRNOG00000006167 | Rasal3
Description
RAS protein activator like 3 [Source:RGD Symbol;Acc:1309019]
Coordinates
chr7:14414703-14415047:-
Coord C1 exon
chr7:14414908-14415047
Coord A exon
chr7:14414782-14414907
Coord C2 exon
chr7:14414703-14414781
Length
126 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CCACTTGTATGGGAGGACAGGGT
3' ss Score
-3.92
Exon sequences
Seq C1 exon
AGCCAGAGCTGGAGTTGGAGGGAGCCCCAGACCTGCGCGCTGCACATATCCCTGAGCCTCCCGCCCCTGACATGCCTGTTTGGAACATTGATGGCTTTGCCCTGCTCGAAGGAAGACTGGTGATGCTCGGTGAGGAGGAG
Seq A exon
GTAAGGAAGAGCAGGGGAGGACAGGGAACGGGTCAGACACGGTGGTAAAGGGGTAAACACCAGAAATGTATGTGTCCCTTCCCGGGTGCCTCCCCTTTCTGACCGCCCACTTGTATGGGAGGACAG
Seq C2 exon
GGTCCTCGCCAAATCCGAATGGGAAGTGCCAGCTCGGAAAGCAGCATGCAGGCAGCCTTGGGGAACCTCAAAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006167:ENSRNOT00000066722:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCTGGAGTTGGAGGGAG
R:
GTCTTTGAGGTTCCCCAAGGC
Band lengths:
212-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]