BtaINT0122639 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011602 | RASAL3
Description
Bos taurus RAS protein activator like 3 (RASAL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102236]
Coordinates
chr7:8713357-8713718:+
Coord C1 exon
chr7:8713357-8713487
Coord A exon
chr7:8713488-8713639
Coord C2 exon
chr7:8713640-8713718
Length
152 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CCACTCCTGCTGGGGGACAGGGT
3' ss Score
2.65
Exon sequences
Seq C1 exon
AGCCTGAGCCGGAGCTGGAGCCCCTGGCCACACAGATCCCAGAGGCTCCCACCCCCGACGTGCCCGTCTGGAACATCGAAGCCTTCACACTACTTGATGGGAAGCTGGTGTTGCTTGGGAATGAAGATGAG
Seq A exon
GTAAGAGGGGCCACACAGGCAAGGAAAGGGGAAGAAAGGAAGGGAGCAAGAACAGCAGTAAGGGAGCATGAGGGGTATAACAGAAAGGTGTTTGCCTCTCCTTCTGTCTGTCTTTCTCCCCTTTCTGACCATCCACTCCTGCTGGGGGACAG
Seq C2 exon
GGTCCTCGCCAGCCCCGGATGGGGAGCGCTAGCTCTGAGAGCAGCATCCACGTGGCCTCAGGGAATCTCAAGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011602:ENSBTAT00000015416:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(13.3=50.0)
A:
NA
C2:
PF0016924=PH=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCACACAGATCCCAGAG
R:
TGGATCCTTGAGATTCCCTGAGG
Band lengths:
186-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]