HsaINT0138084 @ hg38
Intron Retention
Gene
ENSG00000146587 | RBAK
Description
RB associated KRAB zinc finger [Source:HGNC Symbol;Acc:HGNC:17680]
Coordinates
chr7:5057295-5057779:+
Coord C1 exon
chr7:5057295-5057421
Coord A exon
chr7:5057422-5057683
Coord C2 exon
chr7:5057684-5057779
Length
262 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
CCTTCTTTTCCCATTAACAGGAT
3' ss Score
11.2
Exon sequences
Seq C1 exon
GGGCCAGTGTCATTCAAAGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCAGCAGCTGGACCCTGATGAGAAGATAACTTACAGGGATGTGATGTTGGAGAACTATAGCCATCTAGTTTCTGTGG
Seq A exon
GTGAGAATAGCTTGCTTTCTGAATGCTCTCAGTTGAATGGGGTTTTATCCTTGAGTTTGAAGAAATAAGTGATGACACCATTTAATTCCTTGTGGGCACTAGCTGGAGTGTTTATATTATTATTCATTGAAAGGTTCTAACTTTGATAAGGTAAAAAATGGAGCACTTCTGTTATGCAGCTTATGAGGTGGCAACATCTTGTACTTCAGAGATTCTGAAGCCAAGCAGCTTCCCCAAGTCCTCCTTCTTTTCCCATTAACAG
Seq C2 exon
GATATGATACCACCAAGCCAAACGTCATCATTAAGTTGGAGCAGGGAGAGGAGCCGTGGATAATGGGAGGTGAATTTCCATGTCAACATAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146587:ENST00000353796:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCAGTGTCATTCAAAGATG
R:
GGACTATGTTGACATGGAAATTCACC
Band lengths:
221-483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains