RnoINT0124823 @ rn6
Intron Retention
Gene
ENSRNOG00000001099 | Rbak
Description
RB-associated KRAB zinc finger [Source:RGD Symbol;Acc:1562875]
Coordinates
chr12:13438059-13438607:+
Coord C1 exon
chr12:13438059-13438185
Coord A exon
chr12:13438186-13438511
Coord C2 exon
chr12:13438512-13438607
Length
326 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CCTCCTTTTCTTGTTAACAGGGT
3' ss Score
10.2
Exon sequences
Seq C1 exon
GGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGTGGCAGCAGCTGGACTCTGAGGAGAGGACGACCTACCGGGATGTGATGCTGGAGACCTACAGCAACCTCGTCTCCGTGG
Seq A exon
GTGAGGGTCGCTTGCTTCCTAAACACTGAATTTAATGATTTGTCTTTGTGTTTGAAGGAACAAGTGCTAAGACTCTTAGTCCTTTTGGGTAGACATCGGGTATGTCTTTACTGCTCCATTGAATGAGCCTACGTTTCTCCCTTTTGTAGTACTGGAGATTGACCCCAGAGCCTCCTGCATGGTAGGCTACAGCCCTGTACACAAAAGGCTCTGCTTTTACTTGGTAAACACAGGCAAAGCCTTAATGTAACTCATGGTGCAGTTTCCTATACCACAGTGGTTCTCCTATACCACAGTTGGTCCAAACCTCCTTTTCTTGTTAACAG
Seq C2 exon
GGTATGATGTCACCAAGCCAAACGTGATTATTAAGTTGGAACAGGGAGAAGAACCCTGGACAGTGGAAGGTGACCGCCATGCTAAGAGGCATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001099:ENSRNOT00000001455:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=NA C2=0.295
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCACTGTCATTCAAGGAT
R:
TCTTAGCATGGCGGTCACCTT
Band lengths:
214-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]