HsaINT0138666 @ hg19
Intron Retention
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif, single stranded interacting protein 2 [Source:HGNC Symbol;Acc:9909]
Coordinates
chr12:56980633-56981448:+
Coord C1 exon
chr12:56980633-56980710
Coord A exon
chr12:56980711-56981337
Coord C2 exon
chr12:56981338-56981448
Length
627 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TCCTTTGTTGCTGCCTCTAGGGT
3' ss Score
10.15
Exon sequences
Seq C1 exon
AGAGTGACTCAGACATCTCCTCTACAAGTACCTAACCCATCCTGGATGCACCACCATTCATACCTCATGCAGCCTTCA
Seq A exon
GTGAGTATTCAGAAGTGGGCAGAAGCCAAAGAGGCAATTTGATGTAAAGAAAAAACTGGCTGGGCACTGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAAATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGACAAAACCCTGTCTCTACTAAAAATGCCAAAAATTAGCCAGGTGTAGTGGCGGGTGCCTGTAATCCCAGCTACTCAGGAGGCTGATACAGGAGAATTGCTTAAATTCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCGTGCCATTGCACTCCAGTCTGGGCAATAAGAGTGAAACTCCGTCTCAAAAAAAAAAAAAAGGCCTTTGATGCCAGGAGATGTGGGTGTGAGTTCTGGCTCAGACCCTTGTGCAACCCAGCAGTAAGACCTAAGCTTGTTATTCTTAGACGAGGGTCCTTCCACACTGACAGGCAGAGTTCCTATTCTTGTTGCATAGTTGGGTTGCTGCTCACTTACCATTTCCCAGGATTCTTAAATGTCTGTCTCCAGTGGTCCTGACAGCCACCGATCACTGCTTTAGGCAGCCTCACAGGATGCTGCAGCTAACCCTGTCCTTTGTTGCTGCCTCTAG
Seq C2 exon
GGTTCAGTTCTGACACCAGGGATGGACCATCCCATTTCTCTCCAGCCTGCCTCCATGATGGGACCCCTTACCCAGCAACTGGGCCATCTCTCCCTCAGCAGCACAGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067-RBMS2:NM_002898:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=NA C2=0.432
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTGACTCAGACATCTCCTCT
R:
CTGTGCTGCTGAGGGAGAGAT
Band lengths:
184-811
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)