BtaINT0123463 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017830 | RBMS2
Description
Bos taurus RNA binding motif, single stranded interacting protein 2 (RBMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034365]
Coordinates
chr5:57168749-57169277:-
Coord C1 exon
chr5:57169200-57169277
Coord A exon
chr5:57168860-57169199
Coord C2 exon
chr5:57168749-57168859
Length
340 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CCCTTTGCTGCTGCTTCTAGGGT
3' ss Score
9.42
Exon sequences
Seq C1 exon
AGAGTAACTCAGACATCTCCTCTACAAGCACCTAGCCCGTCTTGGATGCACCACCAGTCATACCTCATGCAGCCTTCA
Seq A exon
GTGAGTGTTCAGAAGTGGGCAAAAGCCAAAGTGCCAATTTGATGTAAAAGAAAACAGTGGGATTTGATGAAAGGAGGTGTGGGTGTGAGTCCTGGCTCAGTCTCTCGTGTGACCAGGTGTCTGACCTTACATTCTGTGAGTTTACTATTCTTAGACAAGAACGCCTCCAGCCTGGTAGGCAGAGTGCATGTTCCTGCTGCAGGGCCAGGTGGTTGCTTGCCTGTCATTTTCCAGGATTTTTAAATGTCTGTCAGCAGTGGTTCTGGTAGCCATGAACCTCTGCTTCCTGCAGCCTCACAGGATGCTGCCAACTAACTTTGCCCTTTGCTGCTGCTTCTAG
Seq C2 exon
GGTTCAGTTCTGACACCAGGAATGGACCATCCCATTTCTCTCCAGCCTGCCTCCATGGTGGGACCTCTTACCCAGCAGTTGGGCCACCTCTCTCTCAGCAGCACGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017830:ENSBTAT00000023705:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=NA C2=0.541
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTAACTCAGACATCTCCTCT
R:
GTGCTGCTGAGAGAGAGGTGG
Band lengths:
182-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]