DreINT0125502 @ danRer10
Intron Retention
Gene
ENSDARG00000056150 | rbms2b
Description
RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51]
Coordinates
chr23:25832621-25832860:+
Coord C1 exon
chr23:25832621-25832671
Coord A exon
chr23:25832672-25832749
Coord C2 exon
chr23:25832750-25832860
Length
78 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
ATCGTCATTCATTTTTGCAGGGT
3' ss Score
7.89
Exon sequences
Seq C1 exon
GTACACAATCCCTCCTGGATACATCACCAGTCTTACCTCATGCAGCCTACA
Seq A exon
GTAAGTTGGATTTTAACTGTTGCTCCATTTCTTAAAGTGCCTGAGTAATTCTTTTAATATCGTCATTCATTTTTGCAG
Seq C2 exon
GGTACCGTCCTCACACCCTCGGTCGACCACACCATGACCATCCAGCCCACTGCCATAATAGGGCCTCTCACACAGCAGCTCAGCCATCTGACCCTGGGCACCACAGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056150:ENSDART00000060059:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.297
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACATCACCAGTCTTACCTCA
R:
CCTGTGGTGCCCAGGGTC
Band lengths:
143-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]