HsaINT0140694 @ hg38
Intron Retention
Gene
ENSG00000080345 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:151456578-151457963:+
Coord C1 exon
chr2:151456578-151456620
Coord A exon
chr2:151456621-151457760
Coord C2 exon
chr2:151457761-151457963
Length
1140 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TATTTTTTCGTTTTTCCTAGTTA
3' ss Score
8.27
Exon sequences
Seq C1 exon
GCTTGATGAAGTTCCTAAAGTATATAGTTGTCTGAACAACAAG
Seq A exon
GTAAAAATAGACAATTCTCCATAAACCATACTTTCATGATGAGAAAATGATAGAGTTTAGATAATTTTCTTAAACATAATTCTGCTGATTTTTAAAGGGGTTATTCCTTCTTTCTTTCTTTTTTTCCTGGAGACAGCATTTTGCTCTTGTCACCCAAGCTGGAGTGCAGTGGCAGGATCTCGGCTCACTGCAACCTCCACCTCCTGGGATCAAGTGATTCTCCCACCTCAGCTTCCTGAGTAGCTGGGAGTACAGGCACATGCTACCACACCCAGCTGATTTTTTGTGTATTTAGTAGAGACAGGGTTTCACCATGTTGGGCAGGCTTGTCTCGAACTCCTGACCTCAAGTGATTCGCCTGCCTCGGCTTCCCGAAGTGCTAAGATTACAGGTGTGAGCCAACACGCTTGTCCTGTTCTTCATTTTTAATGGACATTTAATAACACCATATGAACACATTTATAGGGTTTTTTTTTTTTTAAGGATTTAATACTTTAAATTCATGTTAAGTAATGAACTTTTTTTTGGAGACAAAATCTCACCTAGCTGGGAGTGCAGTGGCACGATCACGGCTTACCACACCCCTGCCCTCCTGGGCTCAAGGTGATTCTCCCACCATAGCCTCCCAAGTAGCTAGGACTACAGGCATACACCACCACTCCTGGCTAATTTTTGTATTTTTTGTAGAGGCGGGGTTTTGCCATGTTGCTCAGGCTCGTCTCAAATTCCTGAGCTCAAGCAGTCTGCCCGCTTTGGCTTCCCAAAGTGCTGGGATTACAGGCGTGAACCACTGAGCCCAGCCTAGTTAATCAACTCTTAGCTCATCCCTTTGTATATGATGGCGATTGGACCCAAAGTTTTCTAGGTGAACGTATGTAGGTAACTATTTATCTTGTTATAATTATTACAAAAACATAATTTCTTTTGTTAATAGAAAATAAGTTCAAAATTGAACTGTAATATTAATAACCAAAGCAAATTCACCTGATAATTTGTCGAGTTATAAAGAGGGATATATATTTAAGGCAACAGTGGGGGTTAGTTTAAAATTGTCTTAATTTTAAAAATTGAAATAGCAACATATATTCTGTGAGTTAATATTTAGTATATGTTTTGCTTTTATTTTTTCGTTTTTCCTAG
Seq C2 exon
TTAGAAAAGCTACTGGGAGAAATTATTGCTTGTCTGCAATTCAGCTACACCGGAACTTATGATAGTGAACTTCTTGAACAACTCTCCCCACTATTATGCATAATATTTCTGCACAAGAATAAACAGATTCGAAAACAGAGTGCTCAGTTCTGGAATGCCACTTTTGCCAAAGTGATGATGTTGGTTTATCCTGAAGAGTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080345:ENST00000243326:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development