HsaINT0140701 @ hg38
Intron Retention
Gene
ENSG00000080345 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:151411260-151414919:+
Coord C1 exon
chr2:151411260-151411338
Coord A exon
chr2:151411339-151414822
Coord C2 exon
chr2:151414823-151414919
Length
3484 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
ATGTGATTTTGTTTTTGTAGACT
3' ss Score
8
Exon sequences
Seq C1 exon
TCGTATGACTGGAGAAGAAGGAAAAGAAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAG
Seq A exon
GTATGTATCTGTTTGTTAAACAGTTTTTCACTTTTGGTAGTTTGGTTTTTTTTTTTGGTTTTGTTTTTTTGTTTTGAGGTGTAGTTTTGCTCTTGTTGCCCAGGCGAGAGTGCAATGGCTCAGGCTCGGGCTCGGCTCACTGAAACCTCCGCCTCTCGGGTTCAAGCGATTCTCTTGCCTCAGCCTCCTGAATAGCTGGGATTATAGGCATCCGCCACCGCCCCGGCTAATTTTGTATTTTTAGTAGAGAAGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCCGCCTGCCTCAGCCTCCCAAAGTGTTGGGATTACAGGAGTGAGCCACTGTGTCCAGCCACTTTTGGTGGTTTTTAAAAGTTTTGCCAGTTGACTCAAAAGCTTTGAATCTAAAATAACAGCAATAATACTGATTATAATACTCTTTATTGTTACTTAAAGCTTCTCAGGTACTTTCTTAATTACCTTACACGCTTTATCACTTAACTCTCCATGGTTCCATGAGATTATTTCTTAATGATCACTTTGCAGGTGAAGAAATTAATTTAATTTGCCTAAAGTTGCCTAGGGGCACTTGAATCTGAGTTTGTGCTCTTGAAAGCAGAGATCAGAGATTAATCTGTTTTCTTTCCTTTTGGGAATCTACATCTAAGTAAGTGCTTCTAAAATTACAATTGTCTTTGGTCTAATCTAGGTAGCATTAATTTCTTTTTCCTCATTCACCCTCAGTTTTTGCTACAACCGTTATCATTTTTGCTTTAGGGAAATGATGTTTGACATCATACTGTGGACCTGTGTTCCTGTCTTCACTTGCCTACTTAATGGCTTCCTGACTATCCTTAACATCTTTTAAATTTCCTTGTTTTTAGAATGAAAAAGTTGAACTTTTATCTCCAAAGTTTGAGTTCTCATTTTTATGACCTTGTTCTCTTTTTTTAATTTTTTTTGTTTGTTTTTATTATGACCTTGTTCTTGTGCTTTTATTTTTGTTTTTAATTTTTAAAATTGAGGTGGGGGTCTTGATAGGTTGCCTAAGCCAGTCTTGAACTCCTGGGTCCAAGCGATCCTCCCACCTCAGCCTCCTTAGTAGCTGAGATTACAAGTAGGTGCCACCATGCCCAGCTTTTGTGCTTTTTGTTTGTTTGAGACAGAGTCTTGCTGTGTCGCCCGTGCTGGAGTGCAGTGGCACAATCTCAGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCCGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCCCCCACCACACCCAGCTAATATTTTTAGTAGAGACGGGCTTTCACCATGTTGACCAGGCTGATCTTGAACTCTTGACCTCAGGTGATCCACCCGCCTTGGCCTCTCAGAGGGCTAGGATTATAGGTGTGAGCCACCGTGCCCAGCCGTGTGCCTTTAAACAAGTGTTTCATCCAGACATGTACATTTTAACGTGATTTTTGGCGAAGTATTAACAGAGATACTGCCTACTCTTGGTGGTGTCACAGTCATCAACATTTTTTGTGTAAGCAGAAACTTTATTGTGTGCTAGTTACTTAATATCAGTGTTTATTCCATTTTCTTCATTATCATATTCCATATTATAATAATTAGATGTGAAGACATGCACTTTCGTGTATTGAGTATTTATAGGATCAGGAATTCTATTGCATACTTTTTTTTTTTTTGAGACGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCTTGAACACCTCCTGGGTTCAAGCCGTTCTCCTGCCTCAGCCTCTCAAGTAGCTGGGGTTACAGGCATGTGCCACTACGCCCAGCTACTTTTTTTTTTGTATTTTTAGTAGAGACGGGGGTTTCTCCATGTTGATCAGGCTGGTCTCGAACTGCCGACCTCAGGTGATCCGCCCACCTTGGCCTCCCAAAGTAAGCCTGGGCCATTGTGCCCAGCCTTACTGCATACATTTTGAGTCAAGTTGCATTGTTCGTAAATAGGATTTGTACCTGAAATTATTTGGATGCACATGGAAGGTTGATAATAGGACAATAAGCAATTTTAAGCAATGAAAGGATAATTGAATTCTTTCAGAGTAGGAACCATACCAGGTAAAATAGAACATGTTTATATGTCGTGTTCAGAGTTCAGCTAGGATTGTGTCTAGGAATCTACAACATTCTTGAAAATGAGACACATCATCGTTAAGGAACACTTTCAAGTAAGTTTAATGAAGATTAATCACAAACATTTACTAGCTGTTATCCAGGAGATACACTAGTAGCTCTCAAAGTATTAAGCCTTACTTAGTTGCTTACAACTGGTTGCTGTGCTATATCCCTTACATTCTGTACTCTAGGATTTGCATTTTTTGGCTTCGTTTTGTAAATATAGAAGACACTGCAGGGAAGTATCTGCTCATATATTTAACCATTTACATTTGCTATTCTTCCTGCTCAAGAATAACAATTGAAGATTCCTTGGATATTTGATTCAAATAGATATGGGGGTTTTGAAGATAAATCCCTTTGGAGTAGGAAATGGTACAAGGGAAATGGGGTACAGGGTAAAAGTAAACTTTCATATTGAGATACTCTTTGACAGATTTGGCCTTTTATAGCTTTTACATAAATGGTATGAGTTGGGCTTTAAATTCTAGATTGACAGCCAGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCTGAGGCGGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACAAAAAATACAAAAATATAGGCATGGTGGCGCGCGCCTGTCATCCCAGCTGCTCTTGAACCTGGGAAGCAGAGGTTGCAGGGAACTGAGATTACACCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCTGTCTCAAAAAAAAAAAAAATTTCTAGATTGACATGGATTGAAATTCTCTTATGTATAAGGTTTAAAAAATTGTTTTATTTTACTATTAATTGAGATAATAATAGATACTTTATAAACGTTACATTCTAACCCCTTCCTTCTCCCAGTCTTAGAGGAAGAGATGTCACTCCACTCTAAAGCTAGGATGTTAGCTTTTGGATTTGAGTCTCTTGTTTACTCAGTGGAAGGGCCTTGCTCCCTTTTCCCTGTCATGTCTTTAGCATCTTTCATCTGTTGACCTCTTTGCTTTCATAGGTGTAGAGATATCCTTTATCTTCATTCAGGTGATCTCGATCCAGTTTCCTCTCCTTTCTTTACCAAGCTGTACACATGGCCTTTGGATTTTATTCCTTGTTTATTTTTATTTTTATTTTTTATGCGTATTCTCAAGGATTTGTTGGAGTAACATGATGAATATGCTTGTTCTGTAATCAACTTCTGCTTTCTAAAAATTGATTTACAGTTGTGCTTGTTTGTAATAAATGTGATTTTGTTTTTGTAG
Seq C2 exon
ACTCACATTTCCAGTCAAAACTCGGAGCTGAGTAGTGCTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080345:ENST00000243326:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=FE(7.3=100)
A:
NA
C2:
PF122313=Rif1_N=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development