HsaINT0140710 @ hg38
Intron Retention
Gene
ENSG00000080345 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:151420190-151423042:+
Coord C1 exon
chr2:151420190-151420379
Coord A exon
chr2:151420380-151422949
Coord C2 exon
chr2:151422950-151423042
Length
2570 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TTAATTGCTTTTGTTTGCAGAAA
3' ss Score
9.42
Exon sequences
Seq C1 exon
GCTAATTGAACAAGCCCCAATTCAAATGGGAGAAGAGGCAGTGAGGTGGGCAAAACTGGTCATACCTTTAGTGGTTCATTCAGCACAAAAGGTACATTTGCGGGGAGCAACTGCTCTGGAGATGGGAATGCCATTATTGCTTCAGAAACAGCAAGAAATAGCATCTATTACGGAGCAGCTTATGACTACT
Seq A exon
GTGAGTGTTCTTTTATGTAAGAATTTTCTGGATACTGCATCGGAAGGTTCTGCACTAAGCTTAAAATTCAGTCTGGTGGCCAGGTACGGTGGCTCTCACCTGTAGTCCCAAAGCGGGAGGCTGAGGTGGGAGGATTGCTTGAGGCCAGGAGTTCCAGACCCATCTGGGCAACATAGTGAAGACCCATCTCTACAAAATATCTTAAAAATTAGCTGGGCGTGGTGGCATGCGCCTGTAGTCTCAGATGCTTGGGAGACTAAGGCGGGAGGGTTGCTTGACCAGAAATTTGAGGCTGCAGTGAGCTATGATCTCACCACTGCATTCTAGCCTGGGTGACAGAATGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAATCTGTCTGGGCATATTGGTATAGTTGCACTATGATATAGGATTTTAGCTTTGAATCAAAACCTTAAGAGTTGCATAAGTTAGCAAAGGCACATTGCTCATTACATAGTAGTAAGGAAGGGAGCTATCTATTGTTGCTAAAATCCAGACATTTTACTTCATTCCCAATAAATAGGAAATAGGAATTGTATTTCTGAAAGAGGGAGAGCATTAACTGATTGACTCATGTTTGGGTTGTTACTGTATAATCCCAGTAGATACAAATTTAATGTACATAAACTTACCTAGTCTCTATAGTTTTCTAGTTATTACTTGCCACAGGTTTTAGGTTTTCTAACCATTGTTGTTCTAACATATTTACTGGGCATCTGATATGTGCAGTGCATTGTTGCAGGCGCTGTGAATATAGCAGTGAACAAAAGAGGCTTGATGGAGCTTATTTTCTTGTGGGAGAGATAATTAAGTACATAGTGTAGTAAGTGAAGACCACTAAGGAGAAGAGCAAGGACCGGAGAGTGCTGTGAGAAAGGAATGTAAGGTGGTCAGAGAAGGCAAAGGAAAGGACATTTGAACAGTGATTTGAAGGCAGAGTAGGAGTTACCCATGTAGATAAAGAACCAGACAAGAGAACTATGAGGGCAAAAGGCCCTGCTCTAATGGTTGTGTACCTGGTTGGTGTTCTGGGAACTCTGGGCAGTATGACAGTAGTGGAGTGAATGAGAGTGAGAGGAAAAGAGGGCCCAATCACATAGGACTATGGCAGGGACCATTGTAAGGATGGATTTTTACTCTAGATTACATGGAAAGCCATATTTGAAGGTCTTGTTTTGTTTTTTGTTTGAGACAAGGTCTCACTATATTACCCAAGCTGGTCTCGAACTCCTGGGCTCAAGCAATCCTCCCACTTCACTCTCCCAAAGTGTTGGGATGACAGGCGTGAGCCACCACACCCAGCCCCTAAAACCTGGGATTTTACTTGCTTAAAATGCAGAAGACTTCGTGGTAATGTTCAGTATGACACAGTAACTCGAGTGTCTCATAAATAGCTTTATTCTGATGAATTCAATTTTAGTGACATATATAATTTTTTTTTTTTTTTCGAGACAGTTTCGCAATTGTTGCCCAGGCTGGAGTGCAGTGGCGCAGTCTCAGCTCACTGCAGCTTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCAGGAGTAGCTGGGATTACAGGCACCTGCAACCATGCCCGACCGATATTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGCCAGGCTGGTCTCGAACTCCTGACCTTGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGAGATTGCAGGCATGAGCCACTGCGCCTGACCATAAAATTCTTTCTTTAACCCATTTATCAAGCTTGCAACAAAGCATATATGAAATTCTTTATATAAATTTGAGCTAAAAATTATTTCACGTGTCTGTTGATTATGAAGCTATTAATGTATTTTTTCATTATTGTGAAAAAATACAGTGTCATTTAAACTAGTTAATGATATGCATGCTGACATTTTTAGGGTAAAGTATATTGGTAGAAAAAAAAAGTTGGATTGATGGATGGTAGGATGGCCAGATAGGTGATAAGACCAACATAGTAAAGTGTTAATGGTAGAATCTGAGTGTTTGTATTAGAGCATTTACTGTAAAAACTCACTCGGATTTGCTATATGCTTCAGTTTTCCTTTTGGAGTCTTTTGGGAAAATTTTTTTTTTTTTTTGAGACAGTCTTGCTCTGTCGCCCAGGCTGGAGGACAGTGGCACGATTTCTGCTCTCTGCAACCTCCACCTCCCAGGTTCAAGCAATTCTCATGCCTCAGCCTCCCGAGTAGCAGGAATTATGGGCGTCTGCCACCATGCCCAGCTAATTTTTGTGTTTTTAGTAGAGACAGGGTTTCACCATATTGGCCAGGCCAGTCTTGAACTCCTGACTTCAAGAGTGAGGCCGAGGCAGGTGATTCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCTTGACCCACCGCACCTGGCCTTGGGTGGGGTAATATTTTTATTATGGAGAAAACTATTTGGTTGAATCAGTTTTTGAAAATTATTCCTAGACTTTGGTATTGGATTTTTTTTTCTAAGAGTCTGTTTGGTAAATTAATTGCTTTTGTTTGCAG
Seq C2 exon
AAATTAATCTCAGAACTTCAGAAGCTATTTATGAGTAAAAATGAGACTTACGTGTTAAAATTATGGCCTTTGTTTGTCAAACTACTTGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080345:ENST00000243326:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=FE(17.6=100)
A:
NA
C2:
PF122313=Rif1_N=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development