HsaINT0141190 @ hg19
Intron Retention
Gene
ENSG00000128482 | RNF112
Description
ring finger protein 112 [Source:HGNC Symbol;Acc:12968]
Coordinates
chr17:19314943-19316096:+
Coord C1 exon
chr17:19314943-19314983
Coord A exon
chr17:19314984-19315810
Coord C2 exon
chr17:19315811-19316096
Length
827 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TGGCCTGTTTTGCCCCACAGGTC
3' ss Score
11.92
Exon sequences
Seq C1 exon
GAGAGAAAACAGAGCTTCATGGGAAACAGCGGCAACAGTTG
Seq A exon
GTAAGTAGCAGGGCCTTCCAGGCTGGGATGGGTGCAGTGAGGCCAGGCAGGTCAGTTGAAATGGCCGGTCCTGGAACACAGAGCCCGGCAGCCCAGCCGGGAGGGCTGTCCGCCTGAGGCTGGATCCGCCAGGCTGTGGAGGGAGGGACAGGAAGAAGCAGGTGGGTGCTGCAGGGAGGCAGATGCCAGCTCAGAGCAGAGAGCGGAAGGAATCTTCTAAGATCCAGAGCCATCTGCCCAACTGCAGCACAGGCTGATGGCTTCTCCTCACTGTCCCTGTAGCATGGGGTTGTGGAGGGTATCATCCCTGGGGGCCTGGCTGAAGTCAGCACCTCATGGAGGGAGCCCCGCTGTAGAACGCCGGGAGAGGCTCTTCCCAAGCATTTGCACCAGGCACTGTGCAGACAGCTGCACACGCCTCCTCTCGGATGGCCACCCCAACGGCCCCATGAGGGGTATTGCTATCCTCTCCATTGGGACAGTTAGGAAATTGAGGCCCAGAGAGGGGAAGGAACTTGCTTGCATTTGCATGGCTGGGATGTGGTGGAGTCCATTCCACTCAGATTTTCTCCCTCTCAGACTCTCTCACCATTGCTCTGCTGCCCCCACTCTGAGGCCCCCAGGTCCTAGGACACATGTCAGTGAGGAACGGGCAGAGCTTGGCCTCTCTGGGAGCAGCTCCGCCTGTCCATGGAGGCACTGATGGAAATTGGGTTGGCACAAAGGGACCTCCACTCCCAAGCCATCAGTCTTCCACCACAACCCTGGCCGGTACCCCCTGCCCCCAATAGACATCCTGCTTTTCAATGGCCTGTTTTGCCCCACAG
Seq C2 exon
GTCCCATACACCTTTCCCCAAGTTGGAGCTAGGCCTGGGGCCCCAGCCCATGGCGCCCCGGGAGCTCCCTACCTGCTCCATCTGCCTGGAGAGGTTGCGCGACCCCATCTCGCTGGACTGTGGCCACGACTTCTGCATACGGTGCTTCAGCACACACCGTCTCCCGGGCTGTGAGCCGCCCTGCTGTCCTGAGTGCCGGAAGATATGCAAGCAGAAGAGGGGCCTCCGGAGCCTGGGCGAGAAGATGAAGCTCCTGCCGCAGCGGCCGCTGCCCCCTGCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128482-RNF112:NM_007148:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF152271=zf-C3HC4_4=WD(100=44.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAAACAGAGCTTCATGGGA
R:
CTGCGGCAGGAGCTTCATC
Band lengths:
302-1129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)