Special

MmuINT0135417 @ mm9

Intron Retention

Gene
Description
ring finger protein 112 [Source:MGI Symbol;Acc:MGI:106611]
Coordinates
chr11:61266130-61266998:-
Coord C1 exon
chr11:61266930-61266998
Coord A exon
chr11:61266416-61266929
Coord C2 exon
chr11:61266130-61266415
Length
514 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GATGATGTCCTGCCCTCCAGGTC
3' ss Score
9.68
Exon sequences
Seq C1 exon
GGTTCTCCCCAGGGAGGAAGCACAAGGCTGGATGGGCCAGGCTGTGCAGGGAGGGACCAGGACAAGCAG
Seq A exon
GTGGGTGCTACAGATGCTCAGATCAGAGATCGCAAGGAATCCTCTGAGAACCTGGCCATCTGTTCAGCTGCAGAATGGCTGCCTGGGTGCCAGGAAGCTACCGCCCTCTCTTGACTATCCCAGCAGCTGGGGTTGTAGTTTGTCCCCCCTTGAGGAAGCTCCGCCACAAAAAGACTGGTGGTCTATGGGTTTCCTGAGTGCTGACTCTGGGTACCTTGTAGATGAGGTAGTCATTGCTAATGACTGCCCACAGCCCTAGCCAGAGCACTGCTAATCTCTCCCTTGGTCCTCACCCACAGTTGCATGGCTGGCATGCTGAGGGTTGCTCTCTGGGGTACCCTCTCCCCTCTGTTCTGCTGCTCTCACAAGGAAGTGAGGAATGGGTAGAGTTTGTGTCTCTAGACAGCCCTAGGAAGCTGAGGTTACATAGAGGGGCCTTCACCCCTAAGCTGTCAGACCTCCAAACCCTGCACCCAACAGGCATCCAGCATTCGGATGATGTCCTGCCCTCCAG
Seq C2 exon
GTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACACCGTCCCTCCCCAACCCGGGAGCCGCCCACCTGCTCCATCTGTCTGGAAAGGCTTCGAGAGCCCATCTCGCTGGACTGTGGCCATGACTTCTGCATCCGATGCTTCAGCACACACCGCATCCCAGGCTGTGAGCTACCATGCTGTCCTGAATGCCGGAAGATCTGTAAGCAAAGGAAGGGCCTCCGCAGTCTAGGGGAAAGGATGAAACTCCTACCACAGCGGCCACTGCCCCCTGCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000010086-Rnf112:NM_009548:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.542 A=NA C2=0.130
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF152271=zf-C3HC4_4=WD(100=47.9)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGGAGGAAGCACAAG
R:
CAGTGGCCGCTGTGGTAG
Band lengths:
334-848
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types