MmuINT0135417 @ mm10
Intron Retention
Gene
ENSMUSG00000010086 | Rnf112
Description
ring finger protein 112 [Source:MGI Symbol;Acc:MGI:106611]
Coordinates
chr11:61452628-61453496:-
Coord C1 exon
chr11:61453428-61453496
Coord A exon
chr11:61452914-61453427
Coord C2 exon
chr11:61452628-61452913
Length
514 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GATGATGTCCTGCCCTCCAGGTC
3' ss Score
9.68
Exon sequences
Seq C1 exon
GGTTCTCCCCAGGGAGGAAGCACAAGGCTGGATGGGCCAGGCTGTGCAGGGAGGGACCAGGACAAGCAG
Seq A exon
GTGGGTGCTACAGATGCTCAGATCAGAGATCGCAAGGAATCCTCTGAGAACCTGGCCATCTGTTCAGCTGCAGAATGGCTGCCTGGGTGCCAGGAAGCTACCGCCCTCTCTTGACTATCCCAGCAGCTGGGGTTGTAGTTTGTCCCCCCTTGAGGAAGCTCCGCCACAAAAAGACTGGTGGTCTATGGGTTTCCTGAGTGCTGACTCTGGGTACCTTGTAGATGAGGTAGTCATTGCTAATGACTGCCCACAGCCCTAGCCAGAGCACTGCTAATCTCTCCCTTGGTCCTCACCCACAGTTGCATGGCTGGCATGCTGAGGGTTGCTCTCTGGGGTACCCTCTCCCCTCTGTTCTGCTGCTCTCACAAGGAAGTGAGGAATGGGTAGAGTTTGTGTCTCTAGACAGCCCTAGGAAGCTGAGGTTACATAGAGGGGCCTTCACCCCTAAGCTGTCAGACCTCCAAACCCTGCACCCAACAGGCATCCAGCATTCGGATGATGTCCTGCCCTCCAG
Seq C2 exon
GTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACACCGTCCCTCCCCAACCCGGGAGCCGCCCACCTGCTCCATCTGTCTGGAAAGGCTTCGAGAGCCCATCTCGCTGGACTGTGGCCATGACTTCTGCATCCGATGCTTCAGCACACACCGCATCCCAGGCTGTGAGCTACCATGCTGTCCTGAATGCCGGAAGATCTGTAAGCAAAGGAAGGGCCTCCGCAGTCTAGGGGAAAGGATGAAACTCCTACCACAGCGGCCACTGCCCCCTGCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000010086:ENSMUST00000060255:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=NA C2=0.146
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF152271=zf-C3HC4_4=WD(100=47.9)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGGAGGAAGCACAAG
R:
CAGTGGCCGCTGTGGTAG
Band lengths:
334-848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types