RnoINT0127585 @ rn6
Intron Retention
Gene
ENSRNOG00000002364 | Rnf112
Description
ring finger protein 112 [Source:RGD Symbol;Acc:3986]
Coordinates
chr10:47723233-47724301:-
Coord C1 exon
chr10:47724261-47724301
Coord A exon
chr10:47723519-47724260
Coord C2 exon
chr10:47723233-47723518
Length
742 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
GATGATGTCCTGCCCTCCAGGTC
3' ss Score
9.68
Exon sequences
Seq C1 exon
GAGAGCAAACGAAGCTTCATGGGAAACAGCAGCAACAGTTG
Seq A exon
GTGAGCTATGGGGCCCTCTGGGCTGGGATTGGTGCAGTGGGCCTGTCAGGTCAGCTGGCAAGGCTGGTCCAGGAGCACGGACCTCTGCAGTCCAGCAGACTCCTTTGCTCCACGCTCCCCAGAGTTCTCCCCAGGGGGAAGCACATAGCTGGATGGGCCAGGTTGTGCAGGGAGGGACCAGGACAAGCAGGTGGGTGCTACAGATGCTCAGCTCAGAGAGCAAGGAATCCTCTGAGAACCTGGCCATCTGCTCAGCTGCAGAATGGCTCCCCGGGTGCCAGGAAGCTACCGCCCTCTCCTGACTATCCCAGCAGCTGGGGTTGTAGTTTGTCCCCCCTTGAAGAAGCACCTCCACAAGAAGGCTGGTGGTCTATGGGTTTCCTGAGTGTTGGCCCTGGGCACCTTGTAGATGAGGCAGTCACCGCTAATGATTTCCCACAGCCCTAGCCAGAGCACTGCTAATCTCTCCCTTGGACCTCACCCACAGTTGTATGGCTGGCATGTGTAGAGCCAGCATGGCTGAGGGTTGCTCTCTGGGGTACTCTCCCCTCTGTTCTTGCTGCTCTCATTTGGAATGGCCAGGACCTGAGGTGCAAGGAAGTGAGGAATGGGTAGAGCTTGTCTCTCCAGGCAGCCCTAGGAAGCTGAGGTTCCATAGAGGGGTCTTCACCCCTAAGCTGTCAGACCTCCAAACCCTGCACCCAACAGGCATCCAGCTTTCGGATGATGTCCTGCCCTCCAG
Seq C2 exon
GTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACAGCGTCCCTCCCCACCCCGGGAGTCGCCTACCTGCTCCATCTGTCTGGAAAGGCTTCGAGAGCCTATCTCACTGGACTGTGGCCACGACTTCTGCATCCGATGCTTCAGCACACATCGCATCCCAGGCTGTGAGCTGCCATGCTGTCCTGAATGCCGGAAAATCTGTAAGCAAAAGAAGGGCCTTCGCAGTCTAGGGGAGAGGATGAAGCTCCTACCTCAGCGGCCGCTGCCCCCTGCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002364:ENSRNOT00000003228:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF152271=zf-C3HC4_4=WD(100=42.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAACGAAGCTTCATGGGA
R:
CCGCTGAGGTAGGAGCTTCAT
Band lengths:
303-1045
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]