HsaINT0141196 @ hg19
Intron Retention
Gene
ENSG00000128482 | RNF112
Description
ring finger protein 112 [Source:HGNC Symbol;Acc:12968]
Coordinates
chr17:19317762-19317973:+
Coord C1 exon
chr17:19317762-19317818
Coord A exon
chr17:19317819-19317898
Coord C2 exon
chr17:19317899-19317973
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CAGGACCCCTTCTCTTTCAGCAT
3' ss Score
7.53
Exon sequences
Seq C1 exon
ATGTTTGTCCACGTGGCCGAGGTGATGGGCAAGCATTATGGGATGGTGCCAATCCAG
Seq A exon
GTGAGACACCTATCTCTGGATTCATTGGCCCCAGGCCCCGCCACCCCCATTTGCTGGTGTCAGGACCCCTTCTCTTTCAG
Seq C2 exon
CATCTGGACCTCTTAGTTCGTGACTCATCCCACCCCAACAAGGCAGGGCAGGGGCATGTAGGCAACATCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128482-RNF112:NM_007148:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(7.1=100)
A:
NA
C2:
PF0226314=GBP=FE(9.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTTGTCCACGTGGCCG
R:
ATGTTGCCTACATGCCCCTG
Band lengths:
125-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)