HsaINT0141196 @ hg38
Intron Retention
Gene
ENSG00000128482 | RNF112
Description
ring finger protein 112 [Source:HGNC Symbol;Acc:HGNC:12968]
Coordinates
chr17:19414449-19414660:+
Coord C1 exon
chr17:19414449-19414505
Coord A exon
chr17:19414506-19414585
Coord C2 exon
chr17:19414586-19414660
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CAGGACCCCTTCTCTTTCAGCAT
3' ss Score
7.53
Exon sequences
Seq C1 exon
ATGTTTGTCCACGTGGCCGAGGTGATGGGCAAGCATTATGGGATGGTGCCAATCCAG
Seq A exon
GTGAGACACCTATCTCTGGATTCATTGGCCCCAGGCCCCGCCACCCCCATTTGCTGGTGTCAGGACCCCTTCTCTTTCAG
Seq C2 exon
CATCTGGACCTCTTAGTTCGTGACTCATCCCACCCCAACAAGGCAGGGCAGGGGCATGTAGGCAACATCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128482:ENST00000461366:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(7.1=100)
A:
NA
C2:
PF0226314=GBP=FE(9.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTTGTCCACGTGGCCG
R:
ATGTTGCCTACATGCCCCTG
Band lengths:
125-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development