MmuINT0135423 @ mm9
Intron Retention
Gene
ENSMUSG00000010086 | Rnf112
Description
ring finger protein 112 [Source:MGI Symbol;Acc:MGI:106611]
Coordinates
chr11:61264330-61264536:-
Coord C1 exon
chr11:61264480-61264536
Coord A exon
chr11:61264405-61264479
Coord C2 exon
chr11:61264330-61264404
Length
75 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CAGGACCCTTTCTCTTCCAGCAT
3' ss Score
7.88
Exon sequences
Seq C1 exon
ATGTTCGTTCACGTGGCTGAGGTGATGGGCAAACATTATGGGATGGTACCAATCCAG
Seq A exon
GTAAGACAATTTCTAGTTTCGTCAATCCTGACACACCAATCCCGGCTGCCGGTGTCAGGACCCTTTCTCTTCCAG
Seq C2 exon
CATCTGGATCTCTTAGTCCGAGACTCTTCCCATCATAATAAGTCAGGGCAAGGGCACGTGGGTGACATACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000010086-Rnf112:NM_009548:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.150
Domain overlap (PFAM):
C1:
PF0226314=GBP=PD(4.9=80.0)
A:
NA
C2:
PF0226314=GBP=FE(24.5=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTCGTTCACGTGGCTGAG
R:
CTGGAGTATGTCACCCACGTG
Band lengths:
132-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: