RnoINT0127591 @ rn6
Intron Retention
Gene
ENSRNOG00000002364 | Rnf112
Description
ring finger protein 112 [Source:RGD Symbol;Acc:3986]
Coordinates
chr10:47721411-47721620:-
Coord C1 exon
chr10:47721564-47721620
Coord A exon
chr10:47721486-47721563
Coord C2 exon
chr10:47721411-47721485
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CAGGACCCTTTCTCTTCCAGCAT
3' ss Score
7.88
Exon sequences
Seq C1 exon
ATGTTCGTTCATGTGGCTGAGGTGATGGGCAAACATTATGGGATGGTACCCATCCAG
Seq A exon
GTAAGATTTCTATTTCTAGCCTCGTCAATCCAGACACGCCAATCCTGGCTGCCGGTGTCAGGACCCTTTCTCTTCCAG
Seq C2 exon
CATCTGGATCTCTTAGTCCGTGACTCTTCCCATCACAATAAGTCAGGGCAGGGGCACGTGGGTGATATACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002364:ENSRNOT00000003228:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(7.1=100)
A:
NA
C2:
PF0226314=GBP=FE(9.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGTTCATGTGGCTGAGG
R:
AGTATATCACCCACGTGCCCC
Band lengths:
127-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]