Special

BtaINT0125491 @ bosTau6

Intron Retention

Gene
Description
ring finger protein 112 [Source:HGNC Symbol;Acc:HGNC:12968]
Coordinates
chr19:34668906-34669113:-
Coord C1 exon
chr19:34669057-34669113
Coord A exon
chr19:34668981-34669056
Coord C2 exon
chr19:34668906-34668980
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CAGCACCCCTTCTCTTCCAGCAC
3' ss Score
7.15
Exon sequences
Seq C1 exon
ACGTTTGTCCACGTGGCCGAGGTGATGGGCAGACACTATGGCATGGTGCCAATCCAG
Seq A exon
GTGAGAGCCCGTCTCTGGACTTGGAGCCCAGACCCCGACGCCCCAGCTGCTGCTGTCAGCACCCCTTCTCTTCCAG
Seq C2 exon
CACCTGGACCTCTTAGTTCGTGACTCCTCCCACCCCAGCAAGGCTTGGCAGGGTCACGTGGGCGATGTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000540:ENSBTAT00000000703:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0226314=GBP=FE(9.7=100)
A:
NA
C2:
PF0226314=GBP=PD(11.8=88.0)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTCCACGTGGCCGAG
R:
GATGACATCGCCCACGTGAC
Band lengths:
127-203
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development