HsaINT0141197 @ hg19
Intron Retention
Gene
ENSG00000128482 | RNF112
Description
ring finger protein 112 [Source:HGNC Symbol;Acc:12968]
Coordinates
chr17:19317899-19318200:+
Coord C1 exon
chr17:19317899-19317973
Coord A exon
chr17:19317974-19318082
Coord C2 exon
chr17:19318083-19318200
Length
109 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCCTCTCGCTGCCTCACAGAGA
3' ss Score
7.73
Exon sequences
Seq C1 exon
CATCTGGACCTCTTAGTTCGTGACTCATCCCACCCCAACAAGGCAGGGCAGGGGCATGTAGGCAACATCTTCCAG
Seq A exon
GTGAGTGGTGCAAGGGGATGGGGTGGAGGGGCCATGGACAGGGCAGAGGTGGGGAAGACATGGGAGGCTGGACCTCCTAGCTCAGAGCACTCCTCTCGCTGCCTCACAG
Seq C2 exon
AGATTGTCTGGCAGATACCCCAAGGTGCAGGAGCTGCTGCAAGGGAAGCGAGCCCGTTGCTGCCTCTTGCCTGCCCCAGGGAGGCGGCGGATGAACCAAGGCCATGCAAGCCCTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128482-RNF112:NM_007148:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(9.5=100)
A:
NA
C2:
PF0226314=GBP=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGGACCTCTTAGTTCGTGAC
R:
GCTTGCATGGCCTTGGTTCAT
Band lengths:
186-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)