RnoINT0127579 @ rn6
Intron Retention
Gene
ENSRNOG00000002364 | Rnf112
Description
ring finger protein 112 [Source:RGD Symbol;Acc:3986]
Coordinates
chr10:47721160-47721485:-
Coord C1 exon
chr10:47721411-47721485
Coord A exon
chr10:47721281-47721410
Coord C2 exon
chr10:47721160-47721280
Length
130 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CTATGTGATCCATCCCTCAGAAG
3' ss Score
6.65
Exon sequences
Seq C1 exon
CATCTGGATCTCTTAGTCCGTGACTCTTCCCATCACAATAAGTCAGGGCAGGGGCACGTGGGTGATATACTCCAG
Seq A exon
GTAAGCGGTACAGAGGGAAAGGGTTGATGCCAGGGCGGCAGGTGAGGGAGGCTGGGCTGGGGTCCCCGGAGTGTGCTTACAGAGGGAGGCTGCTTCCTTGGCTCACAGATCTATGTGATCCATCCCTCAG
Seq C2 exon
AAGCTGTCCGGCAAATACCCCAAGGTCCAAGAGCTGCTCCTAGGGAAACGGGCCCGCTGTTACCTCCTTCCTGCTCCTGAGAGACAGTGGGTGAACAAAGGCCAAGCAAGCCCAGGAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002364:ENSRNOT00000003228:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.244
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(9.4=100)
A:
NA
C2:
PF0226314=GBP=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGGATCTCTTAGTCCGTGAC
R:
CCTCCTGGGCTTGCTTGG
Band lengths:
194-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]